Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi130g00001 ATGGAGCTTCCTGAAGCGCGTTCTTTTGGAACCGAAGGAAGAAAACCGACGCATGACTTTCTGTCACTCTACAGTAATTCAACTGCCCAACAAGAGCCAAGGCCACCTTCTCAAGGAAGCTACCTCAAGACCCATGATTTCTTGCAGCCACTAGAACGGGTAGAAACCGAAGCCAATGCCAAGGAAGAAGTTACAGATGAAATAGCATCGGTGGTTTCAGTACTACCACCCCCAGCACCACCACCTTCAGTTGAGCACCTCTTACCTGGAGGAATTGGAACTTACAGTATTAGCCACATTTCCTATTTTAATGATAATCAAAGGGTTCACAAGCCAGAGGCATCCCTTTTCACTGGGCGTCAAGCAACTAGTACAGATAGAAATGATGACAACTCCAACTGCAGTTCATATACTTCAAGTGGTTTCACTTTGTGGGAAGAATCTGCGGCTAAGAAGGGAAAGACAGGAAAGGAGAATAATGCGGGCGAGAAACCCAATATTGAGTCTGCGGCAAAGCTAGGACAGTGGACGTTGCCAGAGCGAACGTCACAGTCGTTTTCTAACAATCGTCAGAGCAGCTTCAAGTCTCGCTCTTCATCACAGACAACCGGGCAGAAGAACCAGAGTTTTACGGAAATGATGAAGTCTGCAAAGGATTGTGCCCAGGATGAAGAGCTAGAAAACGAAGAAACATTTTTTCTTAAGAAAGAATCCTCGAATGCCGAAAGAGAACTGCGGGTGAGAGTGGATGGGAAGAGTACTGATCAAAAGCCAAACACTCCAAGATCAAAACATTCTGCTACAGAACAGCGGAGAAGGAGCAAAATAAATGACAGATTCCAGATGTTACGAGAGCTTATTCCACACAGTGACCAAAAGAGGGACAAAGCATCTTTTTTGTTAGAGGTCATTGAGTATATTCACTTTTTACAAGAGAAGGTGCATAAGTACGAAGGTTCATTCCCAGGGTGGAATAACGTGCCAGAAAAATTGACGCCAATGCAGAGAGATAACGACAGGCCAGCAGAAAGTTTTGAACCTCGTGGCACAAATAGTGGGTCAGGTCCATCTCCAACATTGCTGTTTTCTTCAAAGATTGACGGGAATAATATCACCATCTCCCCATCAACTCCTGGTAGTACCCAGAATGTAGAATCTGGCTTGAGCACAACGACTACCTTCAAGACAATGGATCCTCACTCTGGAATAATGAATAAGGCTTTTCCAATTCCTATTTCTTCACAACCAAATTTCTTCAGTCCAACTCAAATCGGAGCTCAAGGCGGAGTAGTGTCTCAGCTCACACATAGATTGGCATCTGATGCACAGAACACCATATATCAACCTTCAGTGGAGTGTCAGACTATGACTGCTACCAGTGAAAAGCTGAAAGAGAAAGAGCTCACTATTGAAGGTGGTGCTATTAGCATATCAAGTGTGTACTCAAAAGGGTTGTTGGATACACTTACACAAGCACTGCAGAGTTCGGGAGTGGATTTGTCACAGGCTAGCATCTCAGTGCAAATTGAACTTGGTAAGCAAGCTAACATCAGACCAACTGTGCCAGTGTCAATTGGAGGTGCTAAGGATAATGAAGTTCCTTCTAAAAATCAAAGAATGATGCGTTCTAGAGTCGCTAGCGCTGAGAAGTCTGATCAAGCAGTCAAGAAGCTAAAGACATGCAGAAGCTAA 1692 0.4427 MELPEARSFGTEGRKPTHDFLSLYSNSTAQQEPRPPSQGSYLKTHDFLQPLERVETEANAKEEVTDEIASVVSVLPPPAPPPSVEHLLPGGIGTYSISHISYFNDNQRVHKPEASLFTGRQATSTDRNDDNSNCSSYTSSGFTLWEESAAKKGKTGKENNAGEKPNIESAAKLGQWTLPERTSQSFSNNRQSSFKSRSSSQTTGQKNQSFTEMMKSAKDCAQDEELENEETFFLKKESSNAERELRVRVDGKSTDQKPNTPRSKHSATEQRRRSKINDRFQMLRELIPHSDQKRDKASFLLEVIEYIHFLQEKVHKYEGSFPGWNNVPEKLTPMQRDNDRPAESFEPRGTNSGSGPSPTLLFSSKIDGNNITISPSTPGSTQNVESGLSTTTTFKTMDPHSGIMNKAFPIPISSQPNFFSPTQIGAQGGVVSQLTHRLASDAQNTIYQPSVECQTMTATSEKLKEKELTIEGGAISISSVYSKGLLDTLTQALQSSGVDLSQASISVQIELGKQANIRPTVPVSIGGAKDNEVPSKNQRMMRSRVASAEKSDQAVKKLKTCRS 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi130g00001 563 Pfam Helix-loop-helix DNA-binding domain 262 311 IPR011598 GO:0046983
Gabi130g00001 563 SMART finulus 266 316 IPR011598 GO:0046983
Gabi130g00001 563 MobiDBLite consensus disorder prediction 526 563 - -
Gabi130g00001 563 MobiDBLite consensus disorder prediction 327 358 - -
Gabi130g00001 563 Gene3D - 258 325 IPR036638 GO:0046983
Gabi130g00001 563 MobiDBLite consensus disorder prediction 1 46 - -
Gabi130g00001 563 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 11 560 IPR044295 GO:0003700|GO:0006351|GO:0046983
Gabi130g00001 563 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 258 322 IPR036638 GO:0046983
Gabi130g00001 563 FunFam BHLH domain class transcription factor 258 330 - -
Gabi130g00001 563 MobiDBLite consensus disorder prediction 118 138 - -
Gabi130g00001 563 MobiDBLite consensus disorder prediction 20 44 - -
Gabi130g00001 563 MobiDBLite consensus disorder prediction 243 276 - -
Gabi130g00001 563 MobiDBLite consensus disorder prediction 543 563 - -
Gabi130g00001 563 MobiDBLite consensus disorder prediction 182 215 - -
Gabi130g00001 563 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 260 310 IPR011598 GO:0046983
Gabi130g00001 563 MobiDBLite consensus disorder prediction 182 222 - -
Gabi130g00001 563 CDD bHLH_AtBIM_like 259 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi130g00001 Gabi-Chr130 23088 31563 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi130g00001 1 560 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G08130 48.123 3.23e-122 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi130g00001 HLH 4.9e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi130g00001 - - gmx:100808016 851.662