Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1308g00002 ATGAAGAGAGTAAGGGATGAGGCTCCTCCAAAGAAAACGGTTGAATTTGAAGAAGCTATTAGTTTTTTGAACAAGATAAAGAAACGATTCCAAAGTGATGAGCATGTTTACAAATCGTTCTTGAACATTTCCAATATGTACCGCAAAGAGCATAAGGACATAGGTGAAATTTATAGTGAGGTTGCTACCCTGTTTAAGGATCATCGAGATTTGCTTGAGGAGTTCACTAGATTCTTACCAGATAGTTTCGCAGCACCTTCTACACAGCATGCTCCGGATGCTCGAAATTCATTGCAGCGCTTTAGTGAGCGGAGTTCTATGGCACCCATGATGCGGCAAATCAGGGATTTGAACTTGCAGCGCTTTCATGAGAAAAAGAAATCTGTCAAGAAAGCTGAAGGTTTTGGGTTGGCTTCAGACTTTTCTTCTAAGGAAGACAAGGATACCTTAAAGAACATGTATAGTCAAGCATTCAGTTTCTTTGAGAAAGTTAAGGAGAAGTTGAACAGTGCTGATGACTACCAAGCTTTCTTGAAGTGCCTTCATAATTTTTTCGTCAGTGAAATAATAAAAAGGAATGAATTGCAAAATTTGGTAACCGATTTACTTGGAAAGCATCTTGATCTTATGGTGGAATTCAATGATTTCCTGGAGTGTTTGGAAAATATTGATGGGTTCCTTGCTGGTGTCATGAGTAAAAAGTCACTAAGATCATCAAAGTTGGAGGACAAAGACAAAGACAAAGAGCAGAAGCGTGAGATGGATGGAGCTAAAGAGAAGGAAAGATACAGGGAGAAGGAGTACATGGGAAAATCCATTCAAGAACTTGACCTCAGTGACTGTAAACGTTGCACTCCCAGCTACCGGCTTCTACCTGCTGATTATCCAATTCCTACAGCTAGTCAGAGATCTGAGCTTGGTGCTCAAGTATTGAATGATCACTGGGTATCTGTGAGTTCAGGAAGTGAGGATTACTCTTCCGAACATATGTGCAGGAATCAGTACGAAGAGAGCTTGTTCAGATGTGAAGATGACAGATTTGAGCTGGACATGTTATTAGAGTCTGTGAGTTCTGCAGCTAAACGTGCAGAGGAATTATATAATAACATGAATGAAAATAAGATCAATATGGAGACTCTGAACCGTATTGAAGATTACTTTACTGTTCAAAATTTAAGGTGCATTGAACGTCTATATGGTGACCATGGTCTTGACGTTATAGACATATTGCGTAAAAACCCAACTCGTGCGCTCCCTGTAATATTGACTCGACTGAAGCAGAAACAGGAGGAATGGAGTCGGTGTCGTTCAGATTTCAATAAAGTTTGGGCTGAAATTTATTCTAAAAATCACTTAAAGTGA 1362 0.3965 MKRVRDEAPPKKTVEFEEAISFLNKIKKRFQSDEHVYKSFLNISNMYRKEHKDIGEIYSEVATLFKDHRDLLEEFTRFLPDSFAAPSTQHAPDARNSLQRFSERSSMAPMMRQIRDLNLQRFHEKKKSVKKAEGFGLASDFSSKEDKDTLKNMYSQAFSFFEKVKEKLNSADDYQAFLKCLHNFFVSEIIKRNELQNLVTDLLGKHLDLMVEFNDFLECLENIDGFLAGVMSKKSLRSSKLEDKDKDKEQKREMDGAKEKERYREKEYMGKSIQELDLSDCKRCTPSYRLLPADYPIPTASQRSELGAQVLNDHWVSVSSGSEDYSSEHMCRNQYEESLFRCEDDRFELDMLLESVSSAAKRAEELYNNMNENKINMETLNRIEDYFTVQNLRCIERLYGDHGLDVIDILRKNPTRALPVILTRLKQKQEEWSRCRSDFNKVWAEIYSKNHLK 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1308g00002 453 PANTHER SIN3B-RELATED 9 453 IPR039774 GO:0003714
Gabi1308g00002 453 SUPERFAMILY PAH2 domain 9 81 IPR036600 GO:0006355
Gabi1308g00002 453 FunFam Paired amphipathic helix protein SIN3 147 222 - -
Gabi1308g00002 453 Gene3D Paired amphipathic helix 148 221 IPR036600 GO:0006355
Gabi1308g00002 453 ProSiteProfiles PAH domain profile. 12 82 IPR003822 GO:0006355
Gabi1308g00002 453 Coils Coil 353 383 - -
Gabi1308g00002 453 FunFam Paired amphipathic helix SIN3-like protein 11 82 - -
Gabi1308g00002 453 SMART hdac_interact2seq4b 280 380 IPR013194 -
Gabi1308g00002 453 Pfam Paired amphipathic helix repeat 35 79 IPR003822 GO:0006355
Gabi1308g00002 453 Pfam Paired amphipathic helix repeat 172 217 IPR003822 GO:0006355
Gabi1308g00002 453 MobiDBLite consensus disorder prediction 238 263 - -
Gabi1308g00002 453 Gene3D Paired amphipathic helix 11 82 IPR036600 GO:0006355
Gabi1308g00002 453 Pfam Sin3 family co-repressor 282 374 IPR013194 -
Gabi1308g00002 453 SUPERFAMILY PAH2 domain 151 218 IPR036600 GO:0006355
Gabi1308g00002 453 ProSiteProfiles PAH domain profile. 150 220 IPR003822 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1308g00002 Gabi-Chr1308 15773 18493 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gabi1308g00002 Sin3_corepress 4.9e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1308g00002 K11644 - gmx:100807181 595.504