Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1306g00001 ATGGATGAGGGCATGTCAGGTTTTTGTATTAGAGCTGGAAGTGTTCGTAGTAATAGTGGGAGTACTGGCACTAAGTGTGGGCGTTGGAATCCCACTACTGAACAGGTTAAGCTTCTCACTGAACTCTTCAGTTCTGGACTCCGCACTCCAAGCACTGATCAGATTCAAAAGATCTCTACTCAGTTGAGTTTTTATGGTAAGATTGAGAGCAAGAATGTGTTCTATTGGTTTCAGAACCATAAGGCTAGGGAAAGACAGAAACGTCGCAAGGTCTCCTTTGATGATAAGGATGTAATTCGTAGAGAAAGCTCATTAATGTCCATGAATTCTTCTACACAAAATTTTGCTCAGCTTTATCCTGTTTCAGAGAACGACAGGGTGATTGAAACTCTTCAACTCTTCCCTTTGAACTCCTTTGGTGAATTAGAATCAAAGAATCTCAGGGTCCATGGAAATGAATGCAGGGATAATAGGATGTTTTCATATACTATGGTGGGACAAATGGATCACCCACCTCTAGATCTTCGCTTGAGTTTTTTGTAA 543 0.4088 MDEGMSGFCIRAGSVRSNSGSTGTKCGRWNPTTEQVKLLTELFSSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQKRRKVSFDDKDVIRRESSLMSMNSSTQNFAQLYPVSENDRVIETLQLFPLNSFGELESKNLRVHGNECRDNRMFSYTMVGQMDHPPLDLRLSFL 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1306g00001 180 FunFam WUSCHEL-related homeobox 11 25 93 - -
Gabi1306g00001 180 Gene3D - 25 93 - -
Gabi1306g00001 180 ProSiteProfiles 'Homeobox' domain profile. 22 87 IPR001356 GO:0003677
Gabi1306g00001 180 Pfam Homeodomain 26 86 IPR001356 GO:0003677
Gabi1306g00001 180 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 16 108 IPR044555 GO:0003700|GO:0099402
Gabi1306g00001 180 SUPERFAMILY Homeodomain-like 27 89 IPR009057 -
Gabi1306g00001 180 CDD homeodomain 28 88 IPR001356 GO:0003677
Gabi1306g00001 180 SMART HOX_1 24 91 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1306g00001 Gabi-Chr1306 7947 8821 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1306g00001 8 180 Wox Gene Family AT3G11260 55.376 1.89e-60 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Gabi1306g00001 Homeodomain 8.9e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1306g00001 - - pvu:PHAVU_008G226100g 288.5