Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1304g00017 ATGGCGGAAAGGTCAGGGGATGCTTTGAATGAGCATGCAGTTGAAAATCCAGAGGAGATTGCTTCCTTGGTTGATGCGAGCATACGCAATCACACGGAGAGAAGGAATCTGAATTATTTCTCATGTGGGACCGGGAATCCAATTGATGACTGCTGGCGCTGCGATAAGCGTTGGTACCTTCGGCGAAAGCACTTGGCTGATTGTGCCATCGGTTTTGGTCGCAATGCCATTGGTGGCCGCGACGGAAGGTACTACGTTGTAACCGACCCCAGCGACGATGACGCCGTTAACCCCAAACCGGGGACCCTCCGCCACGCCGTCATTCAAGACAGGCCCTTGTGGATCGTGTTCAAGAGGGACATGGTTATTACCCTAAAGCAAGAGCTCATCATGAACAGCTTCAAGACCATAGATGGTCGTGGCGTCAACGTTCACATTGCATATGGGGCCTGCATTACCATCCAGTTCATCACCAATGTTATCATCCATGGCCTCCATATCCATGATTGCAAGCAGACTGGCAATGCTATGGTTCGCAGCTCGCCCTCGCATTATGGATGGAGGACCCTCGCTGATGGGGATGGCATTTCCATCTTTGGTGCCAGTCACATTTGGATTGACCACAACTCACTCTCCAATTGCGCAGATGGCCTTATTGATGCTATTATGGCCTCCACCGCGATTACCGTTTCCAACAACTACTTCACCCACCACAATGAGGTTATGCTACTGGGTCACAGTGACTCTTATGTCCGCGACAAGCAGATGCAAGTAACCATTGCATACAACCATTTTGGGGAGGGTCTTATCCAAAGAATGCCAAGGTGCAGGCATGGGTACTTCCACGTGGTAAACAATGACTATACCCACTGGGAAATGTATGCAATCGGCGGCAGCGCTGATCCCACAATTAACAGCCAAGGCAACAGATACCTTGCCCCTCTGAACCCTTTTGCTAAGGAGGTGACAAAGAGAGTGGAGACAGGGCAAAACCTATGGAAAAGTTGGAATTGGAGATCGGAGGGAGACCTTCTGCTCAATGGAGCCTTTTTCATTTCATCAGGAGCAGGAGCTGCAGCAAGCTATGCTAGAGCCTCAAGTTTGGGGGCCAAATCATCTTCTTTGGTTGGTACCATTACCTCCGCTGCTGGTGTTCTTAATTGTCGGAGAGGTGTCATGTGTTAA 1185 0.5013 MAERSGDALNEHAVENPEEIASLVDASIRNHTERRNLNYFSCGTGNPIDDCWRCDKRWYLRRKHLADCAIGFGRNAIGGRDGRYYVVTDPSDDDAVNPKPGTLRHAVIQDRPLWIVFKRDMVITLKQELIMNSFKTIDGRGVNVHIAYGACITIQFITNVIIHGLHIHDCKQTGNAMVRSSPSHYGWRTLADGDGISIFGASHIWIDHNSLSNCADGLIDAIMASTAITVSNNYFTHHNEVMLLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSADPTINSQGNRYLAPLNPFAKEVTKRVETGQNLWKSWNWRSEGDLLLNGAFFISSGAGAAASYARASSLGAKSSSLVGTITSAAGVLNCRRGVMC 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1304g00017 394 PANTHER PECTATE LYASE 18-RELATED 15 391 IPR045032 GO:0030570
Gabi1304g00017 394 PRINTS Pollen allergen Amb family signature 294 313 IPR018082 -
Gabi1304g00017 394 PRINTS Pollen allergen Amb family signature 192 213 IPR018082 -
Gabi1304g00017 394 PRINTS Pollen allergen Amb family signature 336 360 IPR018082 -
Gabi1304g00017 394 PRINTS Pollen allergen Amb family signature 272 291 IPR018082 -
Gabi1304g00017 394 PRINTS Pollen allergen Amb family signature 365 388 IPR018082 -
Gabi1304g00017 394 PRINTS Pollen allergen Amb family signature 92 117 IPR018082 -
Gabi1304g00017 394 PRINTS Pollen allergen Amb family signature 68 85 IPR018082 -
Gabi1304g00017 394 PRINTS Pollen allergen Amb family signature 128 144 IPR018082 -
Gabi1304g00017 394 Gene3D - 45 387 IPR012334 -
Gabi1304g00017 394 SUPERFAMILY Pectin lyase-like 24 389 IPR011050 -
Gabi1304g00017 394 Pfam Pectate lyase 129 309 IPR002022 -
Gabi1304g00017 394 SMART amb_all 120 317 IPR002022 -
Gabi1304g00017 394 FunFam Pectate lyase 45 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1304g00017 Gabi-Chr1304 188649 194042 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1304g00017 10 394 Polysaccharide Lyase AT4G13710 80.000 0.0 667
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1304g00017 K01728 - gmx:100809277 750.74