Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1304g00006 ATGTCAGATGTGGAAGAGTATTGTTGCTTTATTGGTGGCCTTGCATGGTCAACATCTGATAGGAAGTTAAAGGATACATTTGAAAAATTTGGCAAGCTTGTTGAGGCAAAGGTGGTTGTTGACAAATTCTCTGGGCGCTCTCGTGGTTTTGGATTTGTCACATTTGATGAAAAGAAAGCAATGGAAGATGCTATTGATGCTATGAATGGGATGGATTTAGATGGGCGAACTATTACGGTTGATAAAGCTCAGCCCCAACAAGGATCAACTAGAGATGATGGTGATCGCTACGAAAAGCGGGGTCGTGATCGTGGTCGTGATCGAGATTATGGAGGTGGTCGAGGATCTAATGGTGGTGAATGCTTTAAGTGTGGTAAACCTGGTCATTTTGCTAGAGAGTGCCCTAATGAGGGGGCAAGAGGGGGAAGATATGGTGGCAGGGAAAGTAGTAGACATGGTGGAAGCAGTGGTGGTAGTCACTATGGTCCAGATAGAAATGCAGATCGTTCTTCTGGTGGGCGCAGCAGGGATTCTGGTAGTCATGGAGATTCTGGAAGTGATCGATATCATCGTGACCGTGATCGTGACCGTGCTGGACCATATGAACGACGGGGATCAGGAGGCTTTCGTTGA 633 0.4645 MSDVEEYCCFIGGLAWSTSDRKLKDTFEKFGKLVEAKVVVDKFSGRSRGFGFVTFDEKKAMEDAIDAMNGMDLDGRTITVDKAQPQQGSTRDDGDRYEKRGRDRGRDRDYGGGRGSNGGECFKCGKPGHFARECPNEGARGGRYGGRESSRHGGSSGGSHYGPDRNADRSSGGRSRDSGSHGDSGSDRYHRDRDRDRAGPYERRGSGGFR 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1304g00006 210 Gene3D - 117 178 - -
Gabi1304g00006 210 SMART rrm1_1 8 81 IPR000504 GO:0003723
Gabi1304g00006 210 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 1 207 - -
Gabi1304g00006 210 MobiDBLite consensus disorder prediction 76 210 - -
Gabi1304g00006 210 SMART c2hcfinal6 120 136 IPR001878 GO:0003676|GO:0008270
Gabi1304g00006 210 MobiDBLite consensus disorder prediction 88 113 - -
Gabi1304g00006 210 ProSiteProfiles Zinc finger CCHC-type profile. 121 136 IPR001878 GO:0003676|GO:0008270
Gabi1304g00006 210 FunFam Glycine-rich RNA-binding protein RZ1A 1 116 - -
Gabi1304g00006 210 Gene3D - 2 116 IPR012677 -
Gabi1304g00006 210 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Gabi1304g00006 210 SUPERFAMILY Retrovirus zinc finger-like domains 113 138 IPR036875 GO:0003676|GO:0008270
Gabi1304g00006 210 CDD RRM2_NsCP33_like 9 83 - -
Gabi1304g00006 210 MobiDBLite consensus disorder prediction 167 203 - -
Gabi1304g00006 210 SUPERFAMILY RNA-binding domain, RBD 4 115 IPR035979 GO:0003676
Gabi1304g00006 210 Pfam Zinc knuckle 120 136 IPR001878 GO:0003676|GO:0008270
Gabi1304g00006 210 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 10 79 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1304g00006 Gabi-Chr1304 39388 43517 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1304g00006 9 84 Eukaryotic Initiation Factors Gene Family AT4G34110 32.895 6.13e-07 47.4