Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1302g00016 ATGGGCACTTGCTTTTCTGCCACCAAAATCAGTGGCTCCAACAACACCAAGGCCGCCACTAAAGTGACTACGAAGCCGCAACCGGAGCCGTCCAACCACCAACAACGACAGAGAGCGCCGTCGCACAGCGCGAGTACCAGGCACGCGCCGTACGGGAAGCGCGTCGATTTCGGTTACGAGAAGGACTTCGATAAGCGTTACTCGCTCGGGAAGTTGTTAGGACACGGCCAATTCGGTTACACTTATGTCGGAATAGACAAAGCCGATGGGGATCGTGTGGCCGTTAAGAGGCTCGAGAAGAATAAGATGGTTCTCCCTGTAGCTGTTGAGGATGTTAAGAGAGAGGTTAAGATATTGAAAGCACTTGCGGGCCACGAGAATGTGGTTCAGTTCTATAATGCTTTTGATGATGATTCTTATGTGTACATAGTTATGGAATTATGCGAGGGTGGAGAACTGCTAGATCGGATATTGTCTAAGAAGGACAGCCGTTATAGTGAAAAAGATGCGGCGGTGGTTGTAAGGCAGATGTTGAAGGTTGCAGCTGAGTGTCATTTAAATGGCTTGGTACACCGGGACATGAAACCAGAGAATTTTCTTTTCAAATCAACCAAAGTAGATTCACATTTGAAGGCTACAGATTTTGGCTTGTCAGATTTCATAAAACCTGGAAAGAAGTTTCATGATATTGTTGGCAGTGCTTACTATGTTGCACCCGAAGTGCTAAAACGCAAGTCAGGCCCTCAGTCAGATGTGTGGAGTATTGGTGTTATTACATACATATTGCTATGTGGGAGACGCCCATTTTGGGATAAGACTGAGGATGGTATCTTCAGGGAGGTCTTACGTAACAAGCCTGATTTCCGCCGGAAACCGTGGCCAACTATAAGTAATGCTGCAAAAGATTTTGTGAAGAAGTTGTTGGTAAAGGATCCTCGGGCAAGATTAACTGCTGCTCAAGCTCTATCACATCCATGGGTTAGAGAAGGAGGAGAAGCACTGGAGATTCCTATTGATATATCTGTCCTGAGCAACATGCGGCAGTTTGTGAAGTATAGTCGATTGAAACAATTCGCTCTGAGGGCATTGGCTGGAACACTTAATGAAGAAGAGTTGGGTATTTTGAAAGATCAATTTGATGCAATTGATGTGGACAAAAATGGTTCTATCAGCCTGGAAGAGATGAGACAGGCTCTTGCTAAAGATCTTCCTTGGAAGTTGAAAGAATCACGTGTACTAGAGATATTGCAAGCGATAGACAGCAATACAGATGGACTCGTGGATTTCACTGAGTTCGTGGCAGCTACATTGCATGTGCACCAATTGGAGGAACATGACTCTGATAAGTGGCAGCAACGGTCACAGGCTGCTTTTGAGAAATTTGACCTAGATAAGGATGGATATATTACTCCGGAAGAACTTAGAATGCATACTGGCTTGAGAGGTTCCATTGATCCTCTGCTCGAGGAAGCTGATATTGACAAAGATGGGAAAATCAGCCTACCAGAATTTCGTAGACTTCTAAGAACTGCAAGCATGAGCTCTCAAAATCTGACAAGCCCAACTGGCTATCGGCGGAGGATCTAA 1587 0.4524 MGTCFSATKISGSNNTKAATKVTTKPQPEPSNHQQRQRAPSHSASTRHAPYGKRVDFGYEKDFDKRYSLGKLLGHGQFGYTYVGIDKADGDRVAVKRLEKNKMVLPVAVEDVKREVKILKALAGHENVVQFYNAFDDDSYVYIVMELCEGGELLDRILSKKDSRYSEKDAAVVVRQMLKVAAECHLNGLVHRDMKPENFLFKSTKVDSHLKATDFGLSDFIKPGKKFHDIVGSAYYVAPEVLKRKSGPQSDVWSIGVITYILLCGRRPFWDKTEDGIFREVLRNKPDFRRKPWPTISNAAKDFVKKLLVKDPRARLTAAQALSHPWVREGGEALEIPIDISVLSNMRQFVKYSRLKQFALRALAGTLNEEELGILKDQFDAIDVDKNGSISLEEMRQALAKDLPWKLKESRVLEILQAIDSNTDGLVDFTEFVAATLHVHQLEEHDSDKWQQRSQAAFEKFDLDKDGYITPEELRMHTGLRGSIDPLLEEADIDKDGKISLPEFRRLLRTASMSSQNLTSPTGYRRRI 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1302g00016 528 Gene3D Phosphorylase Kinase; domain 1 60 152 - -
Gabi1302g00016 528 ProSitePatterns EF-hand calcium-binding domain. 492 504 IPR018247 -
Gabi1302g00016 528 SUPERFAMILY Protein kinase-like (PK-like) 48 355 IPR011009 -
Gabi1302g00016 528 FunFam CDPK-related kinase 1 60 152 - -
Gabi1302g00016 528 ProSitePatterns Serine/Threonine protein kinases active-site signature. 189 201 IPR008271 GO:0004672|GO:0006468
Gabi1302g00016 528 PANTHER SERINE/THREONINE-PROTEIN KINASE 51 500 - -
Gabi1302g00016 528 SMART efh_1 374 402 IPR002048 GO:0005509
Gabi1302g00016 528 SMART efh_1 453 481 IPR002048 GO:0005509
Gabi1302g00016 528 SMART efh_1 411 439 IPR002048 GO:0005509
Gabi1302g00016 528 SMART efh_1 483 511 IPR002048 GO:0005509
Gabi1302g00016 528 Pfam EF-hand domain pair 375 436 IPR002048 GO:0005509
Gabi1302g00016 528 Pfam EF-hand domain pair 455 508 IPR002048 GO:0005509
Gabi1302g00016 528 ProSiteProfiles EF-hand calcium-binding domain profile. 487 514 IPR002048 GO:0005509
Gabi1302g00016 528 SMART serkin_6 67 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1302g00016 528 ProSiteProfiles EF-hand calcium-binding domain profile. 449 484 IPR002048 GO:0005509
Gabi1302g00016 528 CDD STKc_CAMK 66 326 - -
Gabi1302g00016 528 SUPERFAMILY EF-hand 359 511 IPR011992 -
Gabi1302g00016 528 ProSitePatterns Protein kinases ATP-binding region signature. 73 96 IPR017441 GO:0005524
Gabi1302g00016 528 ProSitePatterns EF-hand calcium-binding domain. 462 474 IPR018247 -
Gabi1302g00016 528 Pfam Protein kinase domain 67 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1302g00016 528 MobiDBLite consensus disorder prediction 1 44 - -
Gabi1302g00016 528 FunFam calcium-dependent protein kinase 28-like 153 346 - -
Gabi1302g00016 528 ProSitePatterns EF-hand calcium-binding domain. 383 395 IPR018247 -
Gabi1302g00016 528 Gene3D Transferase(Phosphotransferase) domain 1 153 346 - -
Gabi1302g00016 528 ProSitePatterns EF-hand calcium-binding domain. 420 432 IPR018247 -
Gabi1302g00016 528 ProSiteProfiles EF-hand calcium-binding domain profile. 407 442 IPR002048 GO:0005509
Gabi1302g00016 528 Gene3D - 347 507 - -
Gabi1302g00016 528 ProSiteProfiles Protein kinase domain profile. 67 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1302g00016 528 FunFam Calcium-dependent protein kinase 28 368 437 - -
Gabi1302g00016 528 Gene3D - 368 437 - -
Gabi1302g00016 528 ProSiteProfiles EF-hand calcium-binding domain profile. 370 405 IPR002048 GO:0005509
Gabi1302g00016 528 MobiDBLite consensus disorder prediction 1 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1302g00016 Gabi-Chr1302 196195 202151 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1302g00016 1 524 EF-hand Containing Proteins AT2G17890 75.398 0.0 858
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Gabi1302g00016 Pkinase 1.5e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1302g00016 K13412 - gmx:100798941 920.228