Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1302g00005 ATGTTTTCAAAATATGATTTTCTGAAGGATGTCAGTCCTGCCAAGGAGGATTGGAGGATTAAGGTGAAGGTGGTTCGGGCTTGGAAAGTTCCTAACTTTCAACGTAATAATTTTTACGACAATGTTGAAATGGTTTTGATGGATGAACAGGGTGGTCGGATCCATGCCACTGTCAAGGGTTCTTTGCAGGTGTGGAAGAAAATCCATGAAGGAGAGTGTTATTTTATAAAAAAATTTGGAGTTGGATTCAATAGCGATATTTTCAGGCCAACCAGGCATCAGTATCATTTGTCTTTCAACTTGAGGACTGATGTTAAATCGATTGTTGATTCTAATCTTTCTGCGAGTGGATTTGATTTATTTGATTATGAAATCATTGAGAAAGAATCATCTGACTCTCCTTATTTAGTGGACGTCATTGGTTTACTATCAGGAATTGGGGAAGTTTGTGATCGTGTGGTTTCTGGTAAGAAAACCAAAATGGTGGTGTTGGAGCTTGACAACATGAGGGGTCACAAGCTGGAGTGCACTTTGTGGGAGCATTATGTGGATGAGGTGCAATCTTTTTTGGCAAACAGCGACACTCCTCATAACATCATAATAGTTCAACTGGAAAGGATAAAATGTTTTAGGGGTAAGGTCGGGTTAACAAATACAAAATATACAACAAGGATTATCATGGATTCAAAAGTGCCAGAGATCGTTGAGTTCAAACAATGTCTTTCAACCGATGGTGTGGAGAGCAGTTGGAGGTTGACTCAGTTGTCTACTCAATCCTCATATTCTTTCGAAAATGATTTTCTTAAGGAGACTGAAAGAAAGTTTATCAGTGATGTTAAGCTTTGTTCTGTGGTAACAACGTGCATCATGTATGGGACTATAAAATGCATTGAGAGCAAATACAACTGGTGGTACAAGTCTTGCAAGAAATGTCCATTTTCCGTTTGTGAGGATTTTGAGAAGTGGTACTGTAAGAATTGTCTAAAACATTGGGCAAATTATTATCCAAGATTTAGTGTTCAAGTCAGAGTTGTGGACAACACAGATTCTGCTTCGTTTCTTTTGTTTGATCGAGACTGTGTTTCTTTGTTGGGAATGAGTCCTGGTGAATTGCGCGAGCTGCATTTCAAGAGGGGTTCGGATTTGGATCAATTTCCAGAAGAGTTAAATGTTCTGAATGAGAAGTCAATGCTTTTCAGGATAAATGTGAAACAAAAGGATTTGAACACATACAGTGAGCCCAAATATCAAGTTTCTAAAATTTGTAACAGCGACGACATCATCTCAGCGTTCATTAAGTCTCTGATCGATCCAAATGATGAAGCAAATTTCGATAATGCTCACGAAAATGAAATTGTATCGTCGGAACCAGAAAAGGCTGCGGATGTTGAGAGTCAGACCTGTGATAGTGCTGACGTTGGTGATGTTTCTCTGACTATGTTGACACCGATGATCAATTCTCATGATTCCATTACTGAAGAATTTAATTTTTCAGCTGTTCGGACTGCAAAAAAAATAAAGCTTGAGAAAGAGTTACGTTATTTCTAA 1548 0.3831 MFSKYDFLKDVSPAKEDWRIKVKVVRAWKVPNFQRNNFYDNVEMVLMDEQGGRIHATVKGSLQVWKKIHEGECYFIKKFGVGFNSDIFRPTRHQYHLSFNLRTDVKSIVDSNLSASGFDLFDYEIIEKESSDSPYLVDVIGLLSGIGEVCDRVVSGKKTKMVVLELDNMRGHKLECTLWEHYVDEVQSFLANSDTPHNIIIVQLERIKCFRGKVGLTNTKYTTRIIMDSKVPEIVEFKQCLSTDGVESSWRLTQLSTQSSYSFENDFLKETERKFISDVKLCSVVTTCIMYGTIKCIESKYNWWYKSCKKCPFSVCEDFEKWYCKNCLKHWANYYPRFSVQVRVVDNTDSASFLLFDRDCVSLLGMSPGELRELHFKRGSDLDQFPEELNVLNEKSMLFRINVKQKDLNTYSEPKYQVSKICNSDDIISAFIKSLIDPNDEANFDNAHENEIVSSEPEKAADVESQTCDSADVGDVSLTMLTPMINSHDSITEEFNFSAVRTAKKIKLEKELRYF 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1302g00005 515 PANTHER OS03G0429900 PROTEIN 8 436 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Gabi1302g00005 515 SUPERFAMILY Nucleic acid-binding proteins 6 110 IPR012340 -
Gabi1302g00005 515 Gene3D - 114 250 IPR012340 -
Gabi1302g00005 515 Gene3D - 258 431 IPR012340 -
Gabi1302g00005 515 Pfam Domain of unknown function DUF223 43 123 IPR003871 -
Gabi1302g00005 515 SUPERFAMILY Nucleic acid-binding proteins 271 425 IPR012340 -
Gabi1302g00005 515 SUPERFAMILY Nucleic acid-binding proteins 130 246 IPR012340 -
Gabi1302g00005 515 Pfam Replication factor-A C terminal domain 290 423 IPR013955 -
Gabi1302g00005 515 Gene3D - 7 111 IPR012340 -
Gabi1302g00005 515 CDD RPA1_DBD_A_like 19 105 - -
Gabi1302g00005 515 CDD RPA1_DBD_B_like 138 239 - -
Gabi1302g00005 515 CDD RPA1_DBD_C 288 437 IPR047192 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1302g00005 Gabi-Chr1302 123875 126366 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1302g00005 1 425 Core DNA Replication Machinery Family AT5G08020 21.604 3.60e-19 89.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1302g00005 - - adu:107490971 281.182