Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1301g00006 ATGGATCAACCATTACCAACATCATTGTTTTCATTTTTATTATTAACACTTCATCTATCAATATCAGGGGTGATTTCAACAACATTCACTCTAGTTAACCAATGTAACTACACTGTGTGGCCAGCATCAACCGCAACAAGTGGAAATGCAACCATAGAAGCCTCAGGGTTCGTTTTGAAAACGGGTGAGTCTTTCAATGTCACCGCACCCACTTCATGGACTGGCCGCTTCTGGGGTCGGACTCTCTGCACCACAGACTCAACCACCGGAAACTTCTCCTGTGTCACCGGTGATTGCGGCTCCGGCAAGGTCACATGCGGCGGGGGCAGTGGCAGTAGAGCCGCGCCGCCTGTCACGCTGGCCGAGTTTTCTCTAGGCAGCTTCGGTGGCCATGATTTCTTTGACGTCAGCTTGGTAGACGGTTACAACGTCCCCATGCTGGTGGTTCCACACGGTGGTTCTAACGGCAGCTGCAACAGTACCGGTTGTCCGGCGGATCTGAACGCCGTGTGTCCGACGGAGCTTAAGGTCACTGGCGGGGAGAAGAAGCAGCAAGTTGTGGCATGTCAGGGTCCTTGTGCTGCGTTTAATTTGCAGTATTTTTGTTGTGTTGGGAATCATTCGAGTTCAGATACTTGCGAGCCAAGTGTTTATTCTCAAATATTCAAGAGGGAATGCCCACAGGCTTATAGTTATGCTTTTGATGATGGGACAAGCACGTTTACATGTTCATCTTCTGCAGATTATAATATCATCTTTTGTCCTGCCCCTGCCTCTAATAACACCAGCCCGGGATCGCTGGATCAAAGTGTGAGTGTTGGTGTCTCACTTATTGCTGGCAATGGGACAACTCGGTGGCTTTCTGCTTCAGGCGAATTCGCATTTGGATTTTACCAACTTCCAAATAATGAGCTTTTCTTGTTGGCTATATGGTATGACAAGATACCCAACAAGACCATTATTTGGTATGCAAATGGAGACAACCCTGCTCCAGTAGGATCAAGGTTGGAACTAAATGACTCTCGTGGACTAGTGCTAAGTAGCCCTCAAGGTTCAGAGCTATGGAGATCAGATTTCACATCGGGTACAATTTCCAGTGGTCTAATGAATGATACTGGGAATTTTCTGCTTCAGGACAAAAATTTTGTGACATTATGGGACAGTTTTAGTCATCCTACTGACACATTGGTGCCTACTCAAGTAATGGAGTTAAATGGCAATCTTTCTTCACGGCAAGAAGAGTTCAATTTCTCACGTGGAAGGTTCAAACTTCATCTACAAGAAGATGGGAATCTTGTGCTCAACCTTATGAATTTGCCTTACGAGCCTTACTACAACACTGGCACTGCTGATGCTAAGAATAGTACAAATGTTGGCTTGCGTTTGATATTTGAAAAATCAGGTTTGTTATACATACTGAAAAAAAGTGGGGAGAAGTTTAGTATCTTCAAGCCAAATGAGAGTGTCTCAACTGATAGCTTTTACTACAGAGCAACGATAAATTATGATGGTGTTGTCACCGTAGCATATTACCCCAAAGATCCAAAAAATGGACAAAGCTGGGTCAATGCACAGACTATACCAGAAAACATTTGTAATTCTACATTCACAGATGGTGAAGGTGTTTGCGGGTTTAATAGCATCTGCATCCTCAAAGATGACCTAAGGCCAAACTGTACATGCCCGGAAGGATATTCTCTAATTGATTCAAATAACATGTATGGTGGATGCATACCAAATTTCCAAGTTATTTGTCAAGCAGGTGGGTATAGGGGTTCACAGGATGATCTATACATAATGAAGGAATTGCCAAACACTGATTGGCCTAAATCTGATTATGAAATACTTAGTCCTTCTAGTCTACAAGAATGCACAAAATCTTGTTTGCAAGATTGCTTATGTGTGTTGGTTACTTTTAGTGGAGGTTCTTGCCGGAAGAAGAAGCTCCCACTTTCGTTTGGGAGAAAAGATCAGGGAATAAACGGAACTTCTGTCATGAAATTGATGAAAAATGATGATACTCTCGCCCCTTTCCCAAACCCAAATGGGAAGAAAGATCATGATACTTTGATCATTGTGATATCAGTTCTATTGGGAAGCTCTGTGTTTGTCATTTTAACATTGGTTGGTGCAATATGTTTCGGTTTCTCCTATGACAGCAAGAAGATCAAAAGTAGCAGAACCAACAATACTGTTGTTGACAGGAATTTGCGCAATTTTACCTTCAAGGAACTTGCAGAAGCAACAAGCAACTTCGGAGAAGAACTGGGAAGGGGATCCTTTAGCATTGTCTACAAAGGAACAATAGATATGACTGGTGTGGCTGTTAAGAAATTAGACAAGTTGTTGAAAGACAACGATAAGGAATTTCAGACTGAAGTGAATGTGATAGGCCAAACCCATCATAGGAACCTAGTTCGTCTGCTTGGATATTGCAATGAGGAAGAACACCGGATTCTGGTTTATGAGTTGATGAGCAATGGCACTTTAGCAAGCTTCCTTTTCACTAATTTGAAACCAAATTGGAACCAAAGAGTAGACATTGCCCTTGGGGTTGCAAGAGGGCTTGTTTACTTGCATGAGGAATGTTGCACCCAGATCATCCATTGTGACATAAAGCCACAAAATGTACTTCTAGATGATCAGTACAATGCCAGAATTTCAGATTTTGGGTTAGCAAAGCTATTGTTGATTAATCAAAGCCACACTGAAACCGGAATTAGAGGAACAAAAGGGTATGTTGCACCAGATTGGTTCAGGAGTGGACCTATCACTGCTAAGGTTGATACTTATAGTTTTGGTGTGCTATTACTAGAGATCATTTGCTGTAGGAAAAATGTAGAAAAGGAGTTTGTTAGTGAAGAAAAGGGGATTTTAACTGATTGGGCATATGATTGCTACAGGACTAAAAGTCTAAACATTCTTCTAGAAAACGATTGTGATGCTGTCAATGACATGAAGATTTTGGACAGGTTTGTCATGATTGCTATTTGGTGCATTCAAGAAGATCCCTCTCTTAGGCCAACAATGAAGAAGGTTTTGCTGATGCTAGAAGGAATTGTTGAAGTTGCAATTCCCCCAAGTCCCTACCTTTATGGTTCTGTTAGTTGCAATTGA 3117 0.4216 MDQPLPTSLFSFLLLTLHLSISGVISTTFTLVNQCNYTVWPASTATSGNATIEASGFVLKTGESFNVTAPTSWTGRFWGRTLCTTDSTTGNFSCVTGDCGSGKVTCGGGSGSRAAPPVTLAEFSLGSFGGHDFFDVSLVDGYNVPMLVVPHGGSNGSCNSTGCPADLNAVCPTELKVTGGEKKQQVVACQGPCAAFNLQYFCCVGNHSSSDTCEPSVYSQIFKRECPQAYSYAFDDGTSTFTCSSSADYNIIFCPAPASNNTSPGSLDQSVSVGVSLIAGNGTTRWLSASGEFAFGFYQLPNNELFLLAIWYDKIPNKTIIWYANGDNPAPVGSRLELNDSRGLVLSSPQGSELWRSDFTSGTISSGLMNDTGNFLLQDKNFVTLWDSFSHPTDTLVPTQVMELNGNLSSRQEEFNFSRGRFKLHLQEDGNLVLNLMNLPYEPYYNTGTADAKNSTNVGLRLIFEKSGLLYILKKSGEKFSIFKPNESVSTDSFYYRATINYDGVVTVAYYPKDPKNGQSWVNAQTIPENICNSTFTDGEGVCGFNSICILKDDLRPNCTCPEGYSLIDSNNMYGGCIPNFQVICQAGGYRGSQDDLYIMKELPNTDWPKSDYEILSPSSLQECTKSCLQDCLCVLVTFSGGSCRKKKLPLSFGRKDQGINGTSVMKLMKNDDTLAPFPNPNGKKDHDTLIIVISVLLGSSVFVILTLVGAICFGFSYDSKKIKSSRTNNTVVDRNLRNFTFKELAEATSNFGEELGRGSFSIVYKGTIDMTGVAVKKLDKLLKDNDKEFQTEVNVIGQTHHRNLVRLLGYCNEEEHRILVYELMSNGTLASFLFTNLKPNWNQRVDIALGVARGLVYLHEECCTQIIHCDIKPQNVLLDDQYNARISDFGLAKLLLINQSHTETGIRGTKGYVAPDWFRSGPITAKVDTYSFGVLLLEIICCRKNVEKEFVSEEKGILTDWAYDCYRTKSLNILLENDCDAVNDMKILDRFVMIAIWCIQEDPSLRPTMKKVLLMLEGIVEVAIPPSPYLYGSVSCN 1038
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1301g00006 1038 ProSitePatterns Thaumatin family signature. 90 106 IPR017949 -
Gabi1301g00006 1038 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 825 1025 - -
Gabi1301g00006 1038 Gene3D - 270 391 IPR036426 -
Gabi1301g00006 1038 Gene3D Transferase(Phosphotransferase) domain 1 825 1025 - -
Gabi1301g00006 1038 ProSitePatterns Protein kinases ATP-binding region signature. 756 778 IPR017441 GO:0005524
Gabi1301g00006 1038 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase LECRK1 266 390 - -
Gabi1301g00006 1038 PRINTS Pathogenesis-related protein signature 28 40 IPR001938 -
Gabi1301g00006 1038 PRINTS Pathogenesis-related protein signature 132 148 IPR001938 -
Gabi1301g00006 1038 PRINTS Pathogenesis-related protein signature 245 254 IPR001938 -
Gabi1301g00006 1038 SUPERFAMILY Osmotin, thaumatin-like protein 27 255 IPR037176 -
Gabi1301g00006 1038 SUPERFAMILY Protein kinase-like (PK-like) 732 1018 IPR011009 -
Gabi1301g00006 1038 CDD TLP-PA 28 254 - -
Gabi1301g00006 1038 Pfam Thaumatin family 33 255 IPR001938 -
Gabi1301g00006 1038 ProSitePatterns Serine/Threonine protein kinases active-site signature. 867 879 IPR008271 GO:0004672|GO:0006468
Gabi1301g00006 1038 CDD B_lectin 268 392 IPR001480 -
Gabi1301g00006 1038 Gene3D Phosphorylase Kinase; domain 1 714 824 - -
Gabi1301g00006 1038 ProSiteProfiles Thaumatin family profile. 26 255 IPR001938 -
Gabi1301g00006 1038 ProSiteProfiles Protein kinase domain profile. 750 1031 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1301g00006 1038 Gene3D - 392 515 IPR036426 -
Gabi1301g00006 1038 SMART serkin_6 750 1017 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1301g00006 1038 ProSiteProfiles Bulb-type lectin domain profile. 262 390 IPR001480 -
Gabi1301g00006 1038 Pfam D-mannose binding lectin 319 407 IPR001480 -
Gabi1301g00006 1038 SUPERFAMILY alpha-D-mannose-specific plant lectins 306 449 IPR036426 -
Gabi1301g00006 1038 SMART tha2 29 255 IPR001938 -
Gabi1301g00006 1038 FunFam S-receptor-like serine/threonine-protein kinase 719 824 - -
Gabi1301g00006 1038 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 275 1029 - -
Gabi1301g00006 1038 SMART blect_4 268 392 IPR001480 -
Gabi1301g00006 1038 FunFam Thaumatin-like protein 1a 27 255 - -
Gabi1301g00006 1038 Pfam Protein kinase domain 753 1014 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1301g00006 1038 Gene3D Thaumatin 27 255 IPR037176 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1301g00006 Gabi-Chr1301 206471 210865 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1301g00006 8 280 Receptor kinase-like Gene Family AT5G38280 47.312 5.36e-77 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Gabi1301g00006 Pkinase 8.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1301g00006 - - mtr:25487002 1569.29