Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi12g00003 CCACCACCACCACCACCGTCTTCTTCCTCCACAGCTTGTAAATCCACATTGTATCCAAAACTATGCCGTTCCATTCTCTCAACTATACGTTCCTCACCTTCAGATCCCTACCACTTGGGAAAGTTCTCTATTAAGCAAAGCCTCAAACAAGCCAAGAAATTGGCCAAAGTGTTTGAGAACTTCCTCAAAAGGACTCACTCTTCTTATCTCAACCACGCTGAGGTTGCAGCACTAGAAGATTGCAATGAGCTCAACCAGCTCAACGTTGATTACTTGGAGTCACTCTCGGAGGAACTGAAATCTTTAGATTCATCCAACACAGAGTTGGTGGAAAATATTGAAACGTATCTGAGTGCTGTGGCCACTAACCACTACACTTGCTATGATGGATTGGTGGTGACCAAAAGCAACATTGCTAATGCACTTGCGTTACCTCTCAACAATGTTACACAATTCTATAGTGTGTCACTTGGCTTGGTCATGCAGGTTCTCAACAAAAACCTCAAGAAACATAAGACCCGCAAACGTTGTCTTCCCACCAAGGCTCACAAGGTTAGACAGCCGCTTGAAAAGCTCATTAAGCTTCTTCGAACAAAGTATAGTTGCAAAATATCAACCGATTGTCCTAGAAGTGAAAGGATTCTTAAAGAAAGTGAAAGCAAAGGAATTCTACTGAACGACTTTGTGACTGTGAGTCTTGATGGCACAGACAACTTCATTTCCATTGGAGATGCTATTGCTGCTGCACCCAATAATTTAAAGTCAGAAGATGGCTATTTTCTTATCTATGCAAGAAAGGGATACTATGAGGAATATGTCACTGTACCCAAACGAAAGAAGAATATCTTGCTTATTGGTGATGGTATCAACAAGACATGCATCACAGGAAATCATAGTGTCATTGATGGCTGGACAACTTTCAATTCCTCAACCTTTTCTGTCTCTGGACAAAGATTTATTGCAGTGGATATTACATTCAGAAACACAGCAGGACCTGAGAAGCACCAAGCAGTGGCAGTGAGGAACAATGCTGATCTCTCCACATTCTATCGATGCAGTTTTGAAGGATACCAAGACACTCTTTATGTTCACTCTCTCAGGCAATTCTATAAGGAATGTGATATCTATGGTACTGTGGATTTCATTTTTGGCAATGCTGCTGTGGTCTTTCAGAGTTGCAACATCTATGCCAGAAAACCATTGCCAAACCAGAAAAACACTGTCACAGCACAAGGGAGAACTGATCCAAGCCAAAACACTGGAATTTCAATACAAAATTGCAGGATCGATGCTGCACCAGACTTGGCTGAGGACTTAAATTTAACAGAAAATTACTTAGGTAGGCCATGGAAAAAGTATTCAAGAACTGTGTATATGGAGTCATATATTGGAGATTTAATTGATCCTTCTGGATGGTTAGAGTGGAATGGCACAACTGGGTTAGACACCCTCTTTTATGGTGAGTTCAACAACTATGGACCTGGTGCTAATACCAGCAAAAGGGTAAAATGGCGTGGTTACAATTTGTTGAATGCTACTCAAGCTTGGAACTTTACTGTTCTTAATTTTACCATGGGGAATACATGGCTTCCGGATACAGATATACCCTACTCTGGAGGACTATATTAG 1629 0.4125 PPPPPPSSSSTACKSTLYPKLCRSILSTIRSSPSDPYHLGKFSIKQSLKQAKKLAKVFENFLKRTHSSYLNHAEVAALEDCNELNQLNVDYLESLSEELKSLDSSNTELVENIETYLSAVATNHYTCYDGLVVTKSNIANALALPLNNVTQFYSVSLGLVMQVLNKNLKKHKTRKRCLPTKAHKVRQPLEKLIKLLRTKYSCKISTDCPRSERILKESESKGILLNDFVTVSLDGTDNFISIGDAIAAAPNNLKSEDGYFLIYARKGYYEEYVTVPKRKKNILLIGDGINKTCITGNHSVIDGWTTFNSSTFSVSGQRFIAVDITFRNTAGPEKHQAVAVRNNADLSTFYRCSFEGYQDTLYVHSLRQFYKECDIYGTVDFIFGNAAVVFQSCNIYARKPLPNQKNTVTAQGRTDPSQNTGISIQNCRIDAAPDLAEDLNLTENYLGRPWKKYSRTVYMESYIGDLIDPSGWLEWNGTTGLDTLFYGEFNNYGPGANTSKRVKWRGYNLLNATQAWNFTVLNFTMGNTWLPDTDIPYSGGLY 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi12g00003 542 SUPERFAMILY Pectin lyase-like 227 540 IPR011050 -
Gabi12g00003 542 SMART PMEI_2 4 159 IPR006501 GO:0004857
Gabi12g00003 542 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 11 160 IPR035513 -
Gabi12g00003 542 Coils Coil 92 112 - -
Gabi12g00003 542 ProSitePatterns Pectinesterase signature 2. 375 384 IPR033131 -
Gabi12g00003 542 Pfam Pectinesterase 229 526 IPR000070 GO:0030599|GO:0042545
Gabi12g00003 542 Gene3D Invertase/pectin methylesterase inhibitor family protein 10 163 IPR035513 -
Gabi12g00003 542 FunFam Pectinesterase 224 541 - -
Gabi12g00003 542 Gene3D - 227 542 IPR012334 -
Gabi12g00003 542 NCBIfam pectinesterase inhibitor domain 11 160 IPR006501 GO:0004857
Gabi12g00003 542 PANTHER PECTINESTERASE 10 531 - -
Gabi12g00003 542 CDD PMEI-like_3 11 160 - -
Gabi12g00003 542 Pfam Plant invertase/pectin methylesterase inhibitor 10 158 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi12g00003 Gabi-Chr12 90663 106352 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi12g00003 12 541 Carbohydrate Esterase AT3G10720 61.381 0.0 692
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi12g00003 K01051 - gmx:100808277 880.167