Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi12g00002 ATGTCTTTCTTAAACACCTATGGTAAAGTTGATGATGCTGACCAAGCCATTCTCGAAGTTCGCCGAAAAACCAGAAAGAGAATCACCATCATAAGCTTGTCCACAATAGTCCTTATTGGTATTGTGTGTGCTGCTGTATTTGGAACTGTTGCTCGCAACAACTCAAAAGATAACAAAGCTCAAACTTTTTCGAATGCGGTGAGTGCTGTTTGTGATGTGACATTGTACAAGGACGCATGCTATAGAAGCCTTAGTCCTCTTGTGCACTCAGGCCAGGTTCAACCCGTGGATCTGTTCTTGCTGTCAATCAATGTGGCCTTAACTGAGGTTTCAAGAGCTGTTCAGTATTTCTCTGATCAGGGTGTTTTCAGTGGCTTGAATGATAACAACACCAAGCAAGCTTTTCAGAATTGCCAGGATCTTATGGGTCAAGCAATTGATCATCTCAATAGCTCTTTGTCTGCTGGGGGAAATTCTTCCTTTCTTGTTGTTTTGGATGATCTTAGAACTTGGTTGAGTGCTGCAGGTACTTACCAACAGACTTGCATTGATGGCATTGAGGAGGCAAAAGAAGAATTGAAGAACAGTGTTGTTAGCAATCTAAAAAATTCTAGAGAGTTCACCAGTAACAGTCTTGCCATAGTTACTTGGCTTGACAAGGCTGCAAGCACTGTGAACTTGAGGAGGCGTTTGTTGAGTTTGCCTTATCAGAATGAAGAACCAAAGTGGCTTCATTCTAAAGACCGGGAGCTACTTCAAACAGATTATTTGAAGAGAAAAGCTGACATTGTTGTGGCGAAAGATGGCAGTGGGAAATACAAAACAATTTCTGCTGCACTTAAAAAAGTTCCTGACAAAAGTGATAAGAGGACTGTAATCTATGTGAAGAAGGGGGTTTACTACGAAAATGTGAGGGTGCTGAAGACCAAATGGAATGTCATGATCATTGGTGATGGTATGAGTGCTACAATTGTTTCTGGAAGCCTTAACTTTGTGGATGGCACCCCAACATTTTCAACTGCAACATTTGCTGTGTTTGGAAAAAATTTCATTGCTATGGACATGGGATTTCACAACACAGCTGGTCCACAGAAGCACCAGGCAGTGGCACTAATGACAACTTCTGATCAAGCAGTTTACTACAGGTGTCAATTTGATGCATTTCAGGACACTCTATATGCTGTAGCCAATCGCCAATTCTACAGGGAATGCAACATCTATGGAACAGTTGATTTCATTTTTGGCAATTCTGCTGTTGTTTTCCAAAACTGCAACATTTTGCCAAAGGTTCCAATGCAGGGCCAGCAGAACACAATCACAGCACAAGGTAAAACTGACCCCAATATGAACACAGGAATTTCAATTCAAAATTGTACCATTTCACCCTTTGGGAACTTAAATTCTGTCAAAACATACCTTGGAAGACCCTGGAAGAATTATGCAACCACAGTTTATATGCAATCCACAATGGCAAGCTTCATTAATCCAAGTGGCTGGTTACCATGGGTAGGGAACTCAGCACCAGATACCATATTTTATGCAGAATTTCAGAATGTTGGACCAGGTGCTTCAACAAAGAATAGGGTTAAGTGGAAGGGTGTGAAAACCTCCATTACTAGTAAACAAGCAAGCATGTTTACAGTTAATACCTTTCTTTCAGGGAGAAGATGGATTCCAGCTTCGGGTGCCCCCTTTAATCCTTATATGTAA 1710 0.4123 MSFLNTYGKVDDADQAILEVRRKTRKRITIISLSTIVLIGIVCAAVFGTVARNNSKDNKAQTFSNAVSAVCDVTLYKDACYRSLSPLVHSGQVQPVDLFLLSINVALTEVSRAVQYFSDQGVFSGLNDNNTKQAFQNCQDLMGQAIDHLNSSLSAGGNSSFLVVLDDLRTWLSAAGTYQQTCIDGIEEAKEELKNSVVSNLKNSREFTSNSLAIVTWLDKAASTVNLRRRLLSLPYQNEEPKWLHSKDRELLQTDYLKRKADIVVAKDGSGKYKTISAALKKVPDKSDKRTVIYVKKGVYYENVRVLKTKWNVMIIGDGMSATIVSGSLNFVDGTPTFSTATFAVFGKNFIAMDMGFHNTAGPQKHQAVALMTTSDQAVYYRCQFDAFQDTLYAVANRQFYRECNIYGTVDFIFGNSAVVFQNCNILPKVPMQGQQNTITAQGKTDPNMNTGISIQNCTISPFGNLNSVKTYLGRPWKNYATTVYMQSTMASFINPSGWLPWVGNSAPDTIFYAEFQNVGPGASTKNRVKWKGVKTSITSKQASMFTVNTFLSGRRWIPASGAPFNPYM 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi12g00002 569 CDD PMEI-like_3 69 220 - -
Gabi12g00002 569 ProSitePatterns Pectinesterase signature 2. 406 415 IPR033131 -
Gabi12g00002 569 Pfam Pectinesterase 262 554 IPR000070 GO:0030599|GO:0042545
Gabi12g00002 569 Pfam Plant invertase/pectin methylesterase inhibitor 66 214 IPR006501 GO:0004857
Gabi12g00002 569 FunFam Pectinesterase 63 219 - -
Gabi12g00002 569 SUPERFAMILY Pectin lyase-like 260 566 IPR011050 -
Gabi12g00002 569 FunFam Pectinesterase 257 569 - -
Gabi12g00002 569 SMART PMEI_2 62 214 IPR006501 GO:0004857
Gabi12g00002 569 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 65 218 IPR035513 -
Gabi12g00002 569 NCBIfam pectinesterase inhibitor domain 35 218 IPR006501 GO:0004857
Gabi12g00002 569 Gene3D - 257 568 IPR012334 -
Gabi12g00002 569 PANTHER PECTINESTERASE 39 559 - -
Gabi12g00002 569 Gene3D Invertase/pectin methylesterase inhibitor family protein 64 220 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi12g00002 Gabi-Chr12 87229 90046 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi12g00002 4 566 Carbohydrate Esterase AT5G04960 57.093 0.0 651
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi12g00002 - - gmx:100816529 897.886