Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1298g00005 ATGACAACAGCAGAAGAAACTTCAAACATGGATCTGATAAGCCAACATCTCTTAGGGGAAATCTCAGATTCCTTCTTCACCAATCTCCATCCTGTAAAACTTGAACACCCTTCACCAGAATTTGATTTCAGTTCATATATTTCAGATAGTAGCAGCTTTTGCACTTTCCTTGAAGGCTATGATTTGGTAGCAGATATGGAGTTTGTGGAACACAATTCTCCAAAGGGTCTCAAGTCCATAGGAGCCAGCCCTTCAAAGGAAACCCAGAAGAGCAATTACAATGAACAAATGGTATCAGAGAAGAAGAGGAAGAAATCAGAATATAATGAAGCAAGGCATTATAGAGGTGTGAGGAGAAGGCCATGGGGCAAGTTTGCTGCAGAGATTCGTGACCCAACAAGGAAAGGAACAAGGGTTTGGTTAGGTACATTTGATTGTGAAATTGATGCTGCAAAGGCTTATGATTGTGCTGCTTTCAAGATGAGGGGTCAGAAAGCCATTTTGAACTTCCCTTTGGAGGCTGGAGAGTCTGATCCAAAACCAAATAGTTGTGGTAGGAAAAGGAGAAGAGAGAGTGGATTCAAGCTTCCAGAAGTTCAAGTTCATCATGATGGTGTGTCATGA 624 0.4167 MTTAEETSNMDLISQHLLGEISDSFFTNLHPVKLEHPSPEFDFSSYISDSSSFCTFLEGYDLVADMEFVEHNSPKGLKSIGASPSKETQKSNYNEQMVSEKKRKKSEYNEARHYRGVRRRPWGKFAAEIRDPTRKGTRVWLGTFDCEIDAAKAYDCAAFKMRGQKAILNFPLEAGESDPKPNSCGRKRRRESGFKLPEVQVHHDGVS 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1298g00005 207 FunFam Ethylene-responsive transcription factor 2 112 173 - -
Gabi1298g00005 207 MobiDBLite consensus disorder prediction 78 95 - -
Gabi1298g00005 207 Pfam AP2 domain 113 163 IPR001471 GO:0003700|GO:0006355
Gabi1298g00005 207 CDD AP2 113 171 IPR001471 GO:0003700|GO:0006355
Gabi1298g00005 207 Gene3D AP2/ERF domain 112 173 IPR036955 GO:0003700|GO:0006355
Gabi1298g00005 207 SMART rav1_2 113 177 IPR001471 GO:0003700|GO:0006355
Gabi1298g00005 207 PANTHER DNA-BINDING DOMAIN 85 180 IPR044808 GO:0003700|GO:0009873
Gabi1298g00005 207 ProSiteProfiles AP2/ERF domain profile. 113 171 IPR001471 GO:0003700|GO:0006355
Gabi1298g00005 207 MobiDBLite consensus disorder prediction 173 207 - -
Gabi1298g00005 207 MobiDBLite consensus disorder prediction 78 110 - -
Gabi1298g00005 207 PRINTS Ethylene responsive element binding protein signature 114 125 IPR001471 GO:0003700|GO:0006355
Gabi1298g00005 207 PRINTS Ethylene responsive element binding protein signature 153 173 IPR001471 GO:0003700|GO:0006355
Gabi1298g00005 207 MobiDBLite consensus disorder prediction 180 207 - -
Gabi1298g00005 207 MobiDBLite consensus disorder prediction 96 110 - -
Gabi1298g00005 207 SUPERFAMILY DNA-binding domain 113 173 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1298g00005 Gabi-Chr1298 120375 121361 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1298g00005 1 190 AP2-EREBP Transcription Factor Family AT5G07580 43.069 1.05e-42 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gabi1298g00005 AP2 1.7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1298g00005 - - ccaj:109813158 301.597