Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1298g00002 ATGCAAAACTTTGAACCCAGCTTCAATCTTTGCTCCTCAAACATCATCAGCACCACCAGTGATATTAGTATCAATGATTACTTGCTACCCCATGAATTTCCCATCAACAATAATATCATACCAAACCATAATTCTTCTTATTCTAGCCATACCCATCTTCAAGTGACTCAACCCTCTTTCCCTAAGCCTCCAAGATCGACCTCAAATCTAAGCAACCGCAAACCCTCCTTAAACATCACAATCCCTTCCATAACCTCAGATCTCAAAGCAATCTCACAACACAATATGGAAAAAACAAGTGTTTACAAACAGAGTTCTTCTTCTTCTTCAGATCACAATGACAACAAAGAGAATGATAAGCATTATAGAGGTGTTAGAAGGCGACCATGGGGAAAGTTTGCTTCAGAGATACGTGACCCCAATAGAAAAGGCTCAAGGGTATGGCTTGGAACCTTTGACACAGCCATAGAAGCTGCTAAAGCTTATGACAGAGCTGCTTTCAAGATGAGAGGAAGCAAAGCTATATTGAACTTCCCTCTTGAGGTTGAGGATTTTGCAGAGGTTGGTGAGAAGAGGAGAAGAAATGAAGAGAGTGAAGGGAACTATGTGGAGAGTAATAAGCATGTGAAGAAAGAAGAGTGCTCTTCCAATGGAGTTTCTGCTTCAACTCTTTGCCCTTTGACACCTTCATGTTGGAAAGGCTTTTGGGACACTGATGTTACAGGAACTATCTTTAGTGTACCACCTTTGTCCCCTTTATCTCCACTCATGGTCGTTTGA 780 0.4128 MQNFEPSFNLCSSNIISTTSDISINDYLLPHEFPINNNIIPNHNSSYSSHTHLQVTQPSFPKPPRSTSNLSNRKPSLNITIPSITSDLKAISQHNMEKTSVYKQSSSSSSDHNDNKENDKHYRGVRRRPWGKFASEIRDPNRKGSRVWLGTFDTAIEAAKAYDRAAFKMRGSKAILNFPLEVEDFAEVGEKRRRNEESEGNYVESNKHVKKEECSSNGVSASTLCPLTPSCWKGFWDTDVTGTIFSVPPLSPLSPLMVV 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1298g00002 259 PRINTS Ethylene responsive element binding protein signature 161 181 IPR001471 GO:0003700|GO:0006355
Gabi1298g00002 259 PRINTS Ethylene responsive element binding protein signature 122 133 IPR001471 GO:0003700|GO:0006355
Gabi1298g00002 259 ProSiteProfiles AP2/ERF domain profile. 121 179 IPR001471 GO:0003700|GO:0006355
Gabi1298g00002 259 CDD AP2 120 179 IPR001471 GO:0003700|GO:0006355
Gabi1298g00002 259 SUPERFAMILY DNA-binding domain 121 181 IPR016177 GO:0003677
Gabi1298g00002 259 SMART rav1_2 121 185 IPR001471 GO:0003700|GO:0006355
Gabi1298g00002 259 MobiDBLite consensus disorder prediction 46 78 - -
Gabi1298g00002 259 PANTHER DNA-BINDING DOMAIN 86 205 IPR044808 GO:0003700|GO:0009873
Gabi1298g00002 259 MobiDBLite consensus disorder prediction 110 125 - -
Gabi1298g00002 259 MobiDBLite consensus disorder prediction 97 125 - -
Gabi1298g00002 259 Pfam AP2 domain 121 171 IPR001471 GO:0003700|GO:0006355
Gabi1298g00002 259 Gene3D AP2/ERF domain 120 181 IPR036955 GO:0003700|GO:0006355
Gabi1298g00002 259 FunFam Ethylene-responsive transcription factor 2 120 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1298g00002 Gabi-Chr1298 61934 63032 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1298g00002 116 256 AP2-EREBP Transcription Factor Family AT5G51190 56.209 1.83e-52 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gabi1298g00002 AP2 1.3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1298g00002 K09286 - gmx:100795866 263.848