Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1295g00023 ATGAAACGCTCCACCGACGACGTAACCACATCCAAGCCAGTCTTCCTAACCAAAGCACAACGCGAGCAACTCGCCCTTCAACGCCGCCAAGAAGATATCGCCGAACAGAGGCGACTCCAGGAACAGCTGCTTTCAGGTAACCGCCCCTCCGATCCCAAACTCTCCTCCGACCGGGATAGGGATAGGGATAGAGACAGGGATAGGGATAGGGATAGAGATAGAGATAGGGATAGGGATAGAGACAGGGACCGCGACCGTGGCCGTGAGCGTGATAGGGCACGCGATCGAGACCGTGAAACTGAGCGAAGAAACAGAGAGAGGGAGCGCGAAGAGGAGGGTAGGGCTCGCGAGCGTGCTCGTTTGGAGAAATTGGCTGAGCGAGAGCGCGAGAAAGAGATGGAATCAATCAAGGAGCAGTACCTTGGTTCCAAGAAGCCTAAGAAGCGGGTTATCAAACCCAGCGAGAAGTTCCGCTTCTCCTTCGATTGGGAGAACACGGAGGACACCTCGCGTGACATGAACGTGCTGTACCAGAATCCTCACGAGGCTCAACTGCTGTTCGGGCGGGGGTTTCGTGCTGGGATGGACCGCCGTGAGCAGAAGAAGCTGGCGGCCAAGAATGAGAAGGAGATGCGGGAGCAAATCCGTAAGAAGGACGGTGTGGAGGAGAAGCCGGAGGAGGCAGACGCACAGCGGCGAAAGGAGGCCGCCGCTGATATGTATGATACGTTTGACATGAGAGTGGACCGCCATTGGAGCGAGAAGAAGCTTGAAGAGATGACAGAGAGGGATTGGCGTATATTCAGGGAGGACTACAACATCTCTTACAAGGGTTCGAAGATTCCTCGGCCAATGAGGAGCTGGATTGAGAGCAAGTTGAGCCTTGAGCTCTTGAAGGCTGTGGAGAAGGCTGGTTACAAGACCCCTTCTCCCATTCAGATGGCTGCAATTCCTCTTGGGTTGCAGCAACGTGATGTCATTGGCGTTGCCGAGACAGGTTCGGGGAAGACAGCTGCTTTTGTTCTTCCCATGTTGAGTTACATCACCAGGCTTCCTCCCATTAGTGAGGAGAATGAGGCTGAGGGCCCCTATGCTGTTGTCATGGCACCTACTCGTGAGCTTGCGCAGCAGATCGAGGATGAGACTGTTAAGTTTGCTCAGTATATGGGCATCAAGGTTGTTTCCATTGTTGGTGGACAGTCTATTGAGGAGCAAGGGTTTAAGATAAGGCAAGGTTGTGAAATTGTAATTGCCACTCCCGGTCGTTTGATTGACTGCTTGGAGCGACGCTATGCGGTTCTCAACCAGTGCAATTATGTTGTTCTTGATGAGGCTGACCGTATGATTGATATGGGATTTGAACCCCAGGTAATGGGGGTACTGGATGCCATGCCTTCCAGCAATCTGAAACCTGAGAATGAAGATGAAGAGCTTGATGAGAAGAAGATTTATAGGACCACATATATGTTCAGTGCCACCATGCCACCCGCTGTGGAGAGGCTTGCTAGGAAATATTTAAGGAATCCTGTTGTGGTGACCATAGGTACTGCTGGAAAGACTACTGACTTGATCAGCCAGCATGTCAACATGATGAAGGAATCTGAGAAATTTTATAAGCTTCAGAGATTGCTTGACGAGCTTAATGACAAGACGGCAATTGTATTCGTTAACACCAAGAAGAATGCAGATATGGTTGCCAAGAATTTGGACAAGGAAGGCTATCGTGTGACTACTTTGCATGGAGGGAAATCACAGGAGCAGAGGGAGATTAGTCTTGAAGGATTTAGGACCAAGAGATACAATGTTCTTGTTGCAACTGATGTTGCTGGACGTGGGATTGACATACCTGATGTGGCTCATGTCATCAACTATGATATGCCTGGGAATATTGAAATGTACACACATCGTATTGGGCGTACTGGTCGTGCTGGAAAGACAGGTGTGGCTACAACATTCCTGACTCTTCAGGATACTGATGTCTTTTATGACCTCAAACAGATGCTCATTCAAAGCAATAGCACTGTTCCACCTGAATTGGCAAGGCATGAAGCTTCGAAATTCAAGCCAGGATCTATTCCCGACAGACCGCCTAGACGAAATGACACTGTGTTTGCGCATTAG 2121 0.4998 MKRSTDDVTTSKPVFLTKAQREQLALQRRQEDIAEQRRLQEQLLSGNRPSDPKLSSDRDRDRDRDRDRDRDRDRDRDRDRDRDRDRGRERDRARDRDRETERRNREREREEEGRARERARLEKLAEREREKEMESIKEQYLGSKKPKKRVIKPSEKFRFSFDWENTEDTSRDMNVLYQNPHEAQLLFGRGFRAGMDRREQKKLAAKNEKEMREQIRKKDGVEEKPEEADAQRRKEAAADMYDTFDMRVDRHWSEKKLEEMTERDWRIFREDYNISYKGSKIPRPMRSWIESKLSLELLKAVEKAGYKTPSPIQMAAIPLGLQQRDVIGVAETGSGKTAAFVLPMLSYITRLPPISEENEAEGPYAVVMAPTRELAQQIEDETVKFAQYMGIKVVSIVGGQSIEEQGFKIRQGCEIVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVMGVLDAMPSSNLKPENEDEELDEKKIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKTTDLISQHVNMMKESEKFYKLQRLLDELNDKTAIVFVNTKKNADMVAKNLDKEGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTLQDTDVFYDLKQMLIQSNSTVPPELARHEASKFKPGSIPDRPPRRNDTVFAH 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1295g00023 706 Pfam Helicase conserved C-terminal domain 538 644 IPR001650 -
Gabi1295g00023 706 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 362 665 IPR027417 -
Gabi1295g00023 706 CDD SF2_C_DEAD 524 653 - -
Gabi1295g00023 706 FunFam probable ATP-dependent RNA helicase DDX23 517 705 - -
Gabi1295g00023 706 CDD DEADc_DDX23 297 513 - -
Gabi1295g00023 706 Gene3D - 517 704 IPR027417 -
Gabi1295g00023 706 MobiDBLite consensus disorder prediction 203 235 - -
Gabi1295g00023 706 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 286 314 IPR014014 GO:0003724
Gabi1295g00023 706 Coils Coil 90 134 - -
Gabi1295g00023 706 MobiDBLite consensus disorder prediction 27 149 - -
Gabi1295g00023 706 MobiDBLite consensus disorder prediction 681 706 - -
Gabi1295g00023 706 MobiDBLite consensus disorder prediction 52 145 - -
Gabi1295g00023 706 Gene3D - 247 516 IPR027417 -
Gabi1295g00023 706 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 224 683 - -
Gabi1295g00023 706 FunFam probable ATP-dependent RNA helicase DDX23 247 516 - -
Gabi1295g00023 706 Coils Coil 198 224 - -
Gabi1295g00023 706 Pfam DEAD/DEAH box helicase 311 501 IPR011545 GO:0003676|GO:0005524
Gabi1295g00023 706 SMART ultradead3 305 527 IPR014001 -
Gabi1295g00023 706 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 441 449 IPR000629 -
Gabi1295g00023 706 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 539 683 IPR001650 -
Gabi1295g00023 706 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 317 512 IPR014001 -
Gabi1295g00023 706 SMART helicmild6 563 644 IPR001650 -
Gabi1295g00023 706 MobiDBLite consensus disorder prediction 674 706 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1295g00023 Gabi-Chr1295 200486 204934 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1295g00023 287 680 Eukaryotic Initiation Factors Gene Family AT1G72730 33.165 8.42e-62 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1295g00023 K12858 - gmx:100799264 1118.61