Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1292g00004 ATGGCTGCGGTTGCTGAGATTTCCGCTGATGCCAACAAAATGGACTCAAAACCAAAGCAAGAATCTGAATTCAGTGTGCAGAAGCTGGTTGATATGTTCACAAAGTTGAATCCTTTGGCGAAGGAGTTTTTTCCTGCAACATATTCTCCCAATCATCATGATCATCTTCATCGCCATCTGGGCTATAATCAGTTCTCACCCACTAATTTTCTGGTCAACACTAAGCCCACAGCTGATGACAATTTCCCAAACAATCGAAGGAGAAGAAATAATTTTAACCAGGGGAGGAGAAGGTTGAATGGAAAAACACTTAAGGCTCAGAGAGAAGATAGCATTAGGAGAACAGTATATGTTTCTGATATTGATCAGCATGTTACTGAGGAGCGGCTTGCAGCCTTATTCAGCACTTGTGGACAAGTAATTGATTGCCGAATTTGTGGTGATCCACATTCAGTTCTTCGTTTTGCTTTTGTCGAGTTTGCAGATGAACATGGTGCAAGGGCAGCTTTAAACCTTGGTGGTACTGTGCTTGGATACTATCCAGTCAGGGTCCTTCCTTCAAAAACTGCTATCCTTCCTGTGAATCCTACATTCCTCCCTAGGTCGGATGATGAGCGGGAAATGTGTACCCGTACTGTCTATTGTACAAATATTGATAAAAAGGTTTCTCAAGCTGAGGTGAAGAACTTTTTTGAATCAGCTTGTGGTGAGGTTCTGCGCTTGAGGCTTTTAGGGGACCATGTGCATTCAACTCGAATTGCTTTTGTGGAATTTGCTATGGCTGAAAGTGCAATTATTGCACTAAATTGTAGTGGGATGCCCTTGGGAACCCAGCCTATCAGGGTAAGTCCTTCAAAGACTCCAGTGAGGCCAAGGGTCACTCGTCCAACATCACGTTAA 900 0.4333 MAAVAEISADANKMDSKPKQESEFSVQKLVDMFTKLNPLAKEFFPATYSPNHHDHLHRHLGYNQFSPTNFLVNTKPTADDNFPNNRRRRNNFNQGRRRLNGKTLKAQREDSIRRTVYVSDIDQHVTEERLAALFSTCGQVIDCRICGDPHSVLRFAFVEFADEHGARAALNLGGTVLGYYPVRVLPSKTAILPVNPTFLPRSDDEREMCTRTVYCTNIDKKVSQAEVKNFFESACGEVLRLRLLGDHVHSTRIAFVEFAMAESAIIALNCSGMPLGTQPIRVSPSKTPVRPRVTRPTSR 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1292g00004 299 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 114 189 IPR000504 GO:0003723
Gabi1292g00004 299 Gene3D - 199 293 IPR012677 -
Gabi1292g00004 299 Gene3D - 73 190 IPR012677 -
Gabi1292g00004 299 MobiDBLite consensus disorder prediction 1 20 - -
Gabi1292g00004 299 FunFam Polyadenylate-binding protein-interacting protein 11 79 191 - -
Gabi1292g00004 299 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 211 287 IPR000504 GO:0003723
Gabi1292g00004 299 CDD RRM1_CID8_like 112 191 IPR034823 -
Gabi1292g00004 299 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 32 293 - -
Gabi1292g00004 299 MobiDBLite consensus disorder prediction 74 105 - -
Gabi1292g00004 299 MobiDBLite consensus disorder prediction 279 299 - -
Gabi1292g00004 299 CDD RRM2_CID8_like 207 288 IPR034825 -
Gabi1292g00004 299 SUPERFAMILY RNA-binding domain, RBD 78 190 IPR035979 GO:0003676
Gabi1292g00004 299 FunFam Polyadenylate-binding protein-interacting protein 10 205 283 - -
Gabi1292g00004 299 SUPERFAMILY RNA-binding domain, RBD 201 293 IPR035979 GO:0003676
Gabi1292g00004 299 SMART rrm1_1 115 185 IPR000504 GO:0003723
Gabi1292g00004 299 SMART rrm1_1 212 283 IPR000504 GO:0003723
Gabi1292g00004 299 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 213 280 IPR000504 GO:0003723
Gabi1292g00004 299 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 116 178 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1292g00004 Gabi-Chr1292 119167 125791 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1292g00004 98 268 Eukaryotic Initiation Factors Gene Family AT1G34140 25.414 5.77e-11 60.8