Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1289g00010 ATGGGCAAGCAAGGACCTTGCTATCACTGTGGAGTTACAAGCACACCACTTTGGCGTAATGGACCACCTGAGAAGCCAGTACTATGCAATGCATGTGGATCTCGATGGAGGACAAAGGGAACACTTGCAAATTATACCCCTTTACATGCTCGAGCAGAAACTGTTGATTATGAGGATCAAAGTGTTTCCAGGGTAAAGAGCATATCATTAAATAAGAGCAAAGAAGTGAAATTTGTCAAACAAAAGCTGAACCATGATAATGCTGCATCTGGAGGGCTTGCCTATGATTACAACCAAGGATTCCGAAAGGTTGTAGATGAAGATGCAAGCAATAGATCAAGTTCAGGGTCAGCTGTATCTAACTCAGAGAGCTGTGTTCAATTTGGTGGCACAGATGCTAGTGATTTAACAGGTCCTGCTCAGTCAGTGGTCTGGGATGCCATGGTGCCTTCTAAAAAGAGGACATGTGCAGGTCGTTCAAAGCCTTCTTCTGTTGAGAAGCTCACAAAAGATTTATGTACAATTCTTCATGAACAACAGTCTCACTTTTCTGCATCTTCTGAGGAGGATCTTCTTTTTGAAAGCGAAACACCAATGGTCTCTGTTGAGATAGGACATGGAAGCATTCTCATTAGGCATCCCAGCTCTATAGCTCGTGAAGAAGAGTCTGAGGCTAGCTCTCTTTCAGTTGATAATAAACAAAGCTTGATGAGTGAGGCATATTCATGTTCTGGTACCAGACCTATGCATAGTGATTGCAGTGGCATGAACTTCTCATCTCAGGGAGTTAAAAAGGTCAGAAACTCTGTTGGCCAAATATTGCAACAGGAGCAACTTAAAAGGTACAATTATCAGCTTGAAAAACAACAAGTTCTTGGAAATCATGATTCACCACTGTGCTTAATAAATTTAAATGCTGTAGTGAACTATGAGGAGTTTACGAGAAACTTGACTAATGAAGAGCAGCAGCAATTACTGAAGTATCTCCCTGTGGTTGATACTGCCAAACTACCTGATGGCCTTAAAATCATGTTCAGTAGCTCTCAATTCAAGGAGAACTTAACTTATTTTCAGCAACTTCTTGGGGAAGGCGTCTTTGATATCTCTTTGCTGGGGCCAAAACCTGAAGACTGCAAGATGTTGAAAAGGCTTGCGTTATCTAATCTCTCACAGTCAAAATGGGTAGAATACTATAACTTCATCAAGGTGCAGAGATATGAAAGCAGAGCTGGAAAATCTATTGATCTGGAATCTACTGGTATGGCATCAAGTAATGTTGCAAATGGCAAGAGATTGCGTGACAGCCAAAATCAAAATTTTTCAGAATTGAAGACAACAATGAGGAGCCCCAAAAGGGTGATCATAAAGGCTGGCTGTGAGGGCAAAGAAGTTGTAGAAGATGGCTCTAGCTTCAGTCCAAAAAGCCTATTTGCTTTGCCTCATGATGGTAGCTTGTTCATGCTGGGTCCTTTAAACTTTGTGGATGAGAATTCTGATCAGGATCTGCTGCTAGAGGTGCCATCTAACAGTTCTTTTCCACAGGCAGAGCTCCTGCACCCAACTTTAAGCTTTGGTGCTCAAGCCAGCACAAGTAGTAGCTCAGTATACTCACATGCTACTCATCCTTAA 1629 0.4193 MGKQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARAETVDYEDQSVSRVKSISLNKSKEVKFVKQKLNHDNAASGGLAYDYNQGFRKVVDEDASNRSSSGSAVSNSESCVQFGGTDASDLTGPAQSVVWDAMVPSKKRTCAGRSKPSSVEKLTKDLCTILHEQQSHFSASSEEDLLFESETPMVSVEIGHGSILIRHPSSIAREEESEASSLSVDNKQSLMSEAYSCSGTRPMHSDCSGMNFSSQGVKKVRNSVGQILQQEQLKRYNYQLEKQQVLGNHDSPLCLINLNAVVNYEEFTRNLTNEEQQQLLKYLPVVDTAKLPDGLKIMFSSSQFKENLTYFQQLLGEGVFDISLLGPKPEDCKMLKRLALSNLSQSKWVEYYNFIKVQRYESRAGKSIDLESTGMASSNVANGKRLRDSQNQNFSELKTTMRSPKRVIIKAGCEGKEVVEDGSSFSPKSLFALPHDGSLFMLGPLNFVDENSDQDLLLEVPSNSSFPQAELLHPTLSFGAQASTSSSSVYSHATHP 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1289g00010 542 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Gabi1289g00010 542 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Gabi1289g00010 542 PANTHER OSJNBB0038F03.10 PROTEIN 1 537 IPR044589 -
Gabi1289g00010 542 Pfam Asx homology domain 287 367 IPR028020 -
Gabi1289g00010 542 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 295 407 IPR044867 -
Gabi1289g00010 542 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 45 - -
Gabi1289g00010 542 SMART GATA_3 1 53 IPR000679 GO:0006355|GO:0043565
Gabi1289g00010 542 ProSitePatterns GATA-type zinc finger domain. 7 32 IPR000679 GO:0006355|GO:0043565
Gabi1289g00010 542 Gene3D - 3 76 IPR013088 GO:0006355|GO:0008270
Gabi1289g00010 542 CDD ZnF_GATA 6 53 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1289g00010 Gabi-Chr1289 82414 88192 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1289g00010 1 519 C2C2-Gata Transcription Factor Family AT4G17570 52.060 1.41e-151 442
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gabi1289g00010 ASXH 2.8e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1289g00010 - - gmx:100799745 821.231