Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1289g00007 ATGGAACTTAGTCTTAAGCACCAACTTGGCCTTGTTTGTGTCATACTGCTCTTTCCTGCACTGTGTTACTGCAAGCAATATACCGAGTCCAGAGCAACCTATTATGGTACCCCTGATGGTTATGGAAATCCAAATGGAGCTTGTGGCTTTGGCGATTATGGAAGAACGATCCAAGATGGCAGTGTCGCAGCGGTGGCTGGGCTATGGAGGAATGGAGCTGGCTGTGGTGCATGCTATCGGGTTAGGTGCACTTTACCTGGACTCTGCAATCACAATGGAGCAATAGTGTTAGCAACAGACTATGGTCAGGGAGACAGAACAGACTTCATCATGAGCCCACGTGCCTTTGCAAAATTGGGACGAGACGCAAAAGCATCTGCAGAGCTTGCCAAATACGGTGTAGTGGATATTGAATTTGAAAGGGTGTCTTGTAAATACCCTGGTCAAAACATCATGTTTCATGTCCAAGAAAGTAGCAATAACCCTGGCTACTTCGCTGTTGTGCTTCTCTATGTAGATGGAGCATACGATGTCTCTGCTGTTGAGATGTACCTGAAAAACACCAAAGAATGGATGCCCCTGCGCAGGGTCTATGGGGCAGTGTTTGACTATCAAAACCCACCAAGTGGTGAATTCTATTTAAGGTTCCAAGTGAGTGGCAGTGCTGGGGTTTACTGGAAGCAGTCCAAGATTCCTATCCCTGGAAATTGGAAGGCCGGAGCTACTTATGACAGCAAGGTCCAGATTTAA 750 0.468 MELSLKHQLGLVCVILLFPALCYCKQYTESRATYYGTPDGYGNPNGACGFGDYGRTIQDGSVAAVAGLWRNGAGCGACYRVRCTLPGLCNHNGAIVLATDYGQGDRTDFIMSPRAFAKLGRDAKASAELAKYGVVDIEFERVSCKYPGQNIMFHVQESSNNPGYFAVVLLYVDGAYDVSAVEMYLKNTKEWMPLRRVYGAVFDYQNPPSGEFYLRFQVSGSAGVYWKQSKIPIPGNWKAGATYDSKVQI 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1289g00007 249 Gene3D - 23 142 IPR036908 -
Gabi1289g00007 249 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 163 245 IPR007117 -
Gabi1289g00007 249 Pfam Lytic transglycolase 63 137 IPR009009 -
Gabi1289g00007 249 Gene3D - 143 246 IPR036749 -
Gabi1289g00007 249 Pfam Expansin C-terminal domain 151 221 IPR007117 -
Gabi1289g00007 249 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 149 IPR007112 -
Gabi1289g00007 249 SUPERFAMILY PHL pollen allergen 150 245 IPR036749 -
Gabi1289g00007 249 SUPERFAMILY Barwin-like endoglucanases 13 148 IPR036908 -
Gabi1289g00007 249 CDD DPBB_EXLB_N 28 144 - -
Gabi1289g00007 249 PANTHER EXPANSIN-B3 17 248 - -
Gabi1289g00007 249 PRINTS Expansin/Lol pI family signature 231 245 IPR007118 GO:0005576
Gabi1289g00007 249 PRINTS Expansin/Lol pI family signature 132 148 IPR007118 GO:0005576
Gabi1289g00007 249 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576
Gabi1289g00007 249 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576
Gabi1289g00007 249 PRINTS Expansin/Lol pI family signature 191 205 IPR007118 GO:0005576
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1289g00007 Gabi-Chr1289 75240 76883 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1289g00007 1 249 Expansin Gene Family AT4G17030 48.800 1.84e-87 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1289g00007 - - gmx:100779487 377.867