Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1289g00006 ATGGAACTTAGTCTTAAGCACCAACTTGGCCTTGTTTGTGTCATACTGCTCTTTCCTGCACTGTGTAACTGCAAGCAATCTTTTACCAAGTCCAGAGCAACCTATTATAGTACCCCTGATGGTTATGGCACTCCAAATGGAGCTTGTGGGTTTCGCGATTATGGAAGGACGATCCAAGGTGGCAGTGTCGCAGCGGTAGCTGGGCTATGGAGGAATGGAGCTGGCTGTGGTGCATGCTACCGGGTTTGGTGCACTGTACCAGGACTCTGCAATAACAGTGGAGCAATAGTGTTAGCAACAGACTATGGTCAGGGAGACAGAACAGACTTCATCATGAGCCCACGTGCCTTTGCAAAATTGGGACGAGACGCAAAATCATCTGCAGAGCTTGTCAAATACGGTGTAGTGGATATTGGATTTGAAAGGGTGTCTTGTAAATACCCTGGTCAAAACATCATGTTTCATGTCCAAGAAAGTAGCAATAACCCTGGCTACTTCGCTGTTGTGCTTCTCTATGTAGATGGAGCATTCGATGTCTCTGCTGTTGAGATGTACCTGAAAAACACCAGAGAATGGATGCCCCTGCGCAGGGTCTCTGGGGCAGTGTTTGACTATCAAAACCCACCGAGTGGTGAAATCTATTTAAGGTTCCAAGTGAGTGGCAGTGCTGGGGTTTACTGGAAGCAGCCCAAGATTCCTATCCCTGGAAATTGGAAGGCCGGAGCTACTTATGATAGCAAGATCCAGATTTAA 753 0.4728 MELSLKHQLGLVCVILLFPALCNCKQSFTKSRATYYSTPDGYGTPNGACGFRDYGRTIQGGSVAAVAGLWRNGAGCGACYRVWCTVPGLCNNSGAIVLATDYGQGDRTDFIMSPRAFAKLGRDAKSSAELVKYGVVDIGFERVSCKYPGQNIMFHVQESSNNPGYFAVVLLYVDGAFDVSAVEMYLKNTREWMPLRRVSGAVFDYQNPPSGEIYLRFQVSGSAGVYWKQPKIPIPGNWKAGATYDSKIQI 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1289g00006 250 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 164 246 IPR007117 -
Gabi1289g00006 250 Pfam Expansin C-terminal domain 152 221 IPR007117 -
Gabi1289g00006 250 PRINTS Expansin/Lol pI family signature 133 149 IPR007118 GO:0005576
Gabi1289g00006 250 PRINTS Expansin/Lol pI family signature 232 246 IPR007118 GO:0005576
Gabi1289g00006 250 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Gabi1289g00006 250 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576
Gabi1289g00006 250 SUPERFAMILY PHL pollen allergen 151 246 IPR036749 -
Gabi1289g00006 250 Gene3D - 144 247 IPR036749 -
Gabi1289g00006 250 Gene3D - 24 143 IPR036908 -
Gabi1289g00006 250 SUPERFAMILY Barwin-like endoglucanases 13 149 IPR036908 -
Gabi1289g00006 250 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 150 IPR007112 -
Gabi1289g00006 250 PANTHER EXPANSIN-B3 17 249 - -
Gabi1289g00006 250 Pfam Lytic transglycolase 64 124 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1289g00006 Gabi-Chr1289 60650 63464 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1289g00006 1 250 Expansin Gene Family AT4G17030 46.614 1.10e-79 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1289g00006 - - gmx:100779487 362.459