Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1289g00005 ATGGAACTTATTTTTAAGCACCAACTTGGCCTTGTTTGTGTCATGCTACTCTTACCCGCACTGTGTAACTCACAGGATTATTTTACAGACTCCAGAGCAACATATTATGGTAGCCCTGATTGCTATGGGAATCCAAGGGGAGCTTGTGGCTTTGGAGAATATGGAAAAACTGTCAATGATGGCAGTGTTGCAGGCGTGTCTAGGCTATGGAGGAATGGAAGTGGCTGTGGTGCATGCTATCAGGTTAGGTGCAAAATACCACAATACTGTGATGAAACTGGAGCATACGTGGTGGTAACAGACTATGGTGAGGGAGACAGAACAGATTTCATCATGAGTCCACGTGGCTATTCAAGATTGGGACGCAACACAGTTGCATCTGTAGAACTGTTCAAATATGGTGTAGTGGATATTGAATACAAAAGGGTCCCCTGTAGATACCTTGGTTATAACATCGTGTTTAAGGTCCATGAATACAGCAAATTCCCTGACTATTTTGCTGTCGTGATTCTCTATGTAGCTGGAACATATGACGTTGCTGCTGTTGAGATGTGGCAGGAATACTACAAACAATGGACGCCTATGCGCAGGGCCTTTGGGGCAGTGTTTGACTTTGCTTACCCACCACGTGGTGAAATCAAGTTGAGGTTCCAAGTGCGTGGCAGTGCAGGGCTTTATTGGGTGCAGTCCAAGAATGATATCCCTAGTGATTGGAAAGCTGGAGCTGCATATGACACTTTGGTTCAGCTTAATTAG 756 0.4484 MELIFKHQLGLVCVMLLLPALCNSQDYFTDSRATYYGSPDCYGNPRGACGFGEYGKTVNDGSVAGVSRLWRNGSGCGACYQVRCKIPQYCDETGAYVVVTDYGEGDRTDFIMSPRGYSRLGRNTVASVELFKYGVVDIEYKRVPCRYLGYNIVFKVHEYSKFPDYFAVVILYVAGTYDVAAVEMWQEYYKQWTPMRRAFGAVFDFAYPPRGEIKLRFQVRGSAGLYWVQSKNDIPSDWKAGAAYDTLVQLN 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1289g00005 251 CDD DPBB_EXLB_N 29 145 - -
Gabi1289g00005 251 PRINTS Expansin/Lol pI family signature 192 206 IPR007118 GO:0005576
Gabi1289g00005 251 PRINTS Expansin/Lol pI family signature 133 149 IPR007118 GO:0005576
Gabi1289g00005 251 PRINTS Expansin/Lol pI family signature 232 246 IPR007118 GO:0005576
Gabi1289g00005 251 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576
Gabi1289g00005 251 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Gabi1289g00005 251 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 150 IPR007112 -
Gabi1289g00005 251 Gene3D - 19 146 IPR036908 -
Gabi1289g00005 251 PANTHER EXPANSIN-B3 16 249 - -
Gabi1289g00005 251 Pfam Lytic transglycolase 63 140 IPR009009 -
Gabi1289g00005 251 Pfam Expansin C-terminal domain 152 235 IPR007117 -
Gabi1289g00005 251 SUPERFAMILY Barwin-like endoglucanases 14 149 IPR036908 -
Gabi1289g00005 251 Gene3D - 147 250 IPR036749 -
Gabi1289g00005 251 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 164 246 IPR007117 -
Gabi1289g00005 251 SUPERFAMILY PHL pollen allergen 151 245 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1289g00005 Gabi-Chr1289 51399 53795 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1289g00005 9 250 Expansin Gene Family AT4G17030 59.671 3.04e-107 308
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1289g00005 - - gmx:100779487 449.514