Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1289g00002 ATGGCAAACCAATCTTCTTCCTCCGCTTCTTCTTCCTCCCAGTTCACCTACTCCTCCGATGCCTCTTACTTCCCCATGCCTTTCCACCTCCAGCAACCCGCCACACACTACGACTACTCTGCGCCGTACGCGGCTGCGGCGCCACCACCGGCGTATCCGTATCCTCAGGCGCCGCAGTTCCAGAGGGACGCACAGCAGCTATTCCAGAGGGACGCGCAGACGATCACGCCGGAAGCTCTCGAGAACGTGAAAGCTGCAATCGCGAACAGCGAGATCGAGCACAAGGCGGAGGCGAAGAAGAAGGCGGTTCCCCGGAGAGCCGCCGGTCAGTCGTGGGAGGATCCGTCGCTGGCAGAGTGGCCGGAGAACGACCACCGGCTGTTCTGCGGCGATCTAGGAAACGAGGTGAACGACGACGTTTTGTCGAAGGCGTTCTCGCGTTTCCCTTCGTTCAACATGGCTAGGGTTGTGAGGGACAAGCGTTCAGGGAAAACCAAAGGCTACGGATTCGTGAGCTTCGCGGATCCTGCGGATCTGGCCGTTGCGCTGAAAGAGATGAATGGGAAATACGTTGGGAACAGACCAATCAAACTCTGCAAGAGTAAGTGGAGAGAGAGAACTGATATTGGTGCTATGGAGAAGCAGAAGAAGCAATCCAAGAAGAAAACCAAATCTTCTAGGGTTGGGGTCTTGCATTATTGA 702 0.5613 MANQSSSSASSSSQFTYSSDASYFPMPFHLQQPATHYDYSAPYAAAAPPPAYPYPQAPQFQRDAQQLFQRDAQTITPEALENVKAAIANSEIEHKAEAKKKAVPRRAAGQSWEDPSLAEWPENDHRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRSGKTKGYGFVSFADPADLAVALKEMNGKYVGNRPIKLCKSKWRERTDIGAMEKQKKQSKKKTKSSRVGVLHY 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1289g00002 233 MobiDBLite consensus disorder prediction 95 116 - -
Gabi1289g00002 233 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 60 218 - -
Gabi1289g00002 233 MobiDBLite consensus disorder prediction 209 233 - -
Gabi1289g00002 233 Gene3D - 62 199 IPR012677 -
Gabi1289g00002 233 SUPERFAMILY RNA-binding domain, RBD 108 205 IPR035979 GO:0003676
Gabi1289g00002 233 MobiDBLite consensus disorder prediction 217 233 - -
Gabi1289g00002 233 FunFam RNA-binding protein 42 59 210 - -
Gabi1289g00002 233 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 127 197 IPR000504 GO:0003723
Gabi1289g00002 233 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 125 203 IPR000504 GO:0003723
Gabi1289g00002 233 CDD RRM_RBM42 119 201 IPR034215 -
Gabi1289g00002 233 SMART rrm1_1 126 199 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1289g00002 Gabi-Chr1289 27548 30241 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1289g00002 75 205 Eukaryotic Initiation Factors Gene Family AT1G71770 24.265 1.50e-11 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1289g00002 K25079 - gmx:100807693 311.227