Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1287g00002 ATGGCTTCTTTAGCGGTGGAAACCTGCAATATGCAGGTGGACATTGATGAGAAGAACACACATCATGATGTAAGGTCTCAGTGGGTGCTTAACGCTCCTGAGCCCCCAAGTCCATGGCGTGTGGTTGCAGATTCTGTGAGGAAAACCATCTCCAATTGTCGAGAAAAGTTTTCCCCTCTCAGAAATCAACCCTGCACCACACTTGTGCTTTCAGTTTTGCAGGGGATTTTTCCTATTCTTAACTGGGGCAGAAACTATACTGCTACTAAATTCAGGAAAGATTTTCTTGCAGGCCTCACTATTGCAAGTCTCTGTATTCCCCAGAGCATTGGGTATGCCACCCTAGCACACCTTGATCCTCAATATGGCCTTTATACAAGTGTTGTACCACCTCTTATCTATGCTGTAATGGGAACTTCGAGAGAGATAGCAATTGGTCCTGTGGCAGTGGTTTCGCTGCTTTTATCCTCAATGATCCAGAAATTAATAGACCCTGCTGTTGATCCTGTGGGTTATACAAAGCTGATTTTGCTTACCACTCTCTTTGCTGGTATCTTTCAAACTGCGTTTGGACTCTTCAGGTTGGGGTTCCTTGTGGATTTCTTATCCCATGCTGCAATTGTTGGATTTGTAGCAGGAGCAGCCGTTGTGATTGGTCTTCAACAGTTGAAGGGACTTTTAGGAATCACTTATTTTACCACCAAAACCGACATAATCTCTGTCATGAAAGCTGTCTGGGAAGCAGCAGTTCATAATCCCTGGAACCCTCGTAATTTTATCCTCGGATGCTCGTTCTTGGTCTTCATCCTAACAACTAGATTTCTGGGTAAAAAGAAGAAGAAGCTATTCTGGTTGGCATCAATCTCTCCTCTTGTATCTGTTATACTGTCAACTCTAGTTGTTTTTCTGACACGAGCAGATAAAAATGGAGTTAAAATTGTTAAATACGTTAAAGGGGGACTGAATCCAAGCTCCATTCATCAGTTAGATTTCAATAACCCCAATGTTGGAGAAGTCGCCAAAATTGGACTAGTCGTTGCTGTTGTTGCCCTTACTGAATCTGTTGCTGTTGGACGGTCTTTTGCATCCATCAAAGGGTACCAACTTGACGGAAACAAGGAGATGGTGTCAATAGGCTTCACAAACATCATAGGCTCTTTAACCTCCTGCTATGTTGCAACTGGTTCGTTCTCGCGTACTGCGGTCAATTATGCAGCTGGCTGTGAAACTTTAGTGTCAAACATTGTGATGGCCGTCACCGTCTCAATATCACTGCAGTTTTTGACAAAGCTCTTATATTATACCCCAACAGCTATTCTTGCTTCAGTAATCCTCTCTGCTCTCCCAGGACTCATTGACATCAATGAAGCTTACAAAATTTGGAAGGTTGATAAGCTTGACTTTCTTGCTTGCTCTGGAGCCTTCTTTGGTGTACTCTTTGCATCTGTCGAGATTGGTCTTCTAGTGGCGGTGGTAATATCCTTTTCAAAGATCATTCTCATTTCTATTCGACCTGGCACAGAAACTCTAGGAAAACTTCCTGGAACTGATTTGTTCTGCGATGTGTATCAATATCCAATGGCAGTGAAGATTCCTGGGGTTATGATAATACGTGTCAAGTCTGCATTGCTTTGCTTTGCAAATGCCAATTTCGTTAGAGAAAGGATTATCAAATGGGTCACTCAGGAAGAATCAGAAGATGACAAGGGAAATTCAAAAAGCACTATTCAACTTGTTATTCTTGACACCTCCAATTTGGTGAACATTGACACCTCCGGAATTGCTTCTCTAGAGGCACTGCACAAGAGTTTGTCTTCCAAGGGGAAACAGTTAGCCATTGCAAACCCAAGGTGGCAAGTGATTCACAAGCTAAAGGTGTCCAACTTTGTCACCAAAATCGGTGGCAGAGTCTTTCTGACTGTTGAAGAAGCTATTGGCTGCAAAAGCGAGTGCTAA 1956 0.4294 MASLAVETCNMQVDIDEKNTHHDVRSQWVLNAPEPPSPWRVVADSVRKTISNCREKFSPLRNQPCTTLVLSVLQGIFPILNWGRNYTATKFRKDFLAGLTIASLCIPQSIGYATLAHLDPQYGLYTSVVPPLIYAVMGTSREIAIGPVAVVSLLLSSMIQKLIDPAVDPVGYTKLILLTTLFAGIFQTAFGLFRLGFLVDFLSHAAIVGFVAGAAVVIGLQQLKGLLGITYFTTKTDIISVMKAVWEAAVHNPWNPRNFILGCSFLVFILTTRFLGKKKKKLFWLASISPLVSVILSTLVVFLTRADKNGVKIVKYVKGGLNPSSIHQLDFNNPNVGEVAKIGLVVAVVALTESVAVGRSFASIKGYQLDGNKEMVSIGFTNIIGSLTSCYVATGSFSRTAVNYAAGCETLVSNIVMAVTVSISLQFLTKLLYYTPTAILASVILSALPGLIDINEAYKIWKVDKLDFLACSGAFFGVLFASVEIGLLVAVVISFSKIILISIRPGTETLGKLPGTDLFCDVYQYPMAVKIPGVMIIRVKSALLCFANANFVRERIIKWVTQEESEDDKGNSKSTIQLVILDTSNLVNIDTSGIASLEALHKSLSSKGKQLAIANPRWQVIHKLKVSNFVTKIGGRVFLTVEEAIGCKSEC 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1287g00002 651 FunFam Sulfate transporter 31 504 650 - -
Gabi1287g00002 651 SUPERFAMILY SpoIIaa-like 529 645 IPR036513 -
Gabi1287g00002 651 CDD STAS_SulP_like_sulfate_transporter 525 639 - -
Gabi1287g00002 651 Gene3D STAS domain 504 649 IPR036513 -
Gabi1287g00002 651 ProSitePatterns SLC26A transporters signature. 120 141 IPR018045 GO:0008271|GO:0008272
Gabi1287g00002 651 PANTHER SULFATE TRANSPORTER 67 646 IPR001902 GO:0016020|GO:0055085
Gabi1287g00002 651 ProSiteProfiles STAS domain profile. 544 648 IPR002645 -
Gabi1287g00002 651 NCBIfam sulfate permease 78 641 IPR001902 GO:0016020|GO:0055085
Gabi1287g00002 651 Pfam Sulfate permease family 91 471 IPR011547 GO:0016020
Gabi1287g00002 651 Pfam STAS domain 525 644 IPR002645 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1287g00002 Gabi-Chr1287 13278 20065 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1287g00002 25 645 Inorganic Solute Cotransporters AT5G10180 69.775 0.0 894
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1287g00002 K17469 - gmx:100781327 1117.83