Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1286g00005 ATGGCTTCTTCAGTCGTGAACATCGAAGACGAACAGGTCCTGGCCAATGATTTTCAGGATCTTTCAATCAAGGATCTGGGTGAAAAGGGGAGTGAAGCAGAGATTCACCGGGGGGGATTTGGAAATCATGGGGGAATCTGTGCTATTTGTTTGGATAAGATAGTGCTGCAGGAAACTGCTCTTGTAAAAGGTTGCGAGCATGCTTACTGTGTAATATGCATCCTTCGCTGGGCCTCATACAATCCGAAAGTTACCTGCCCTCAATGTAAACATCCATTTGAATTCCTCAATGTCCATCGCTCACTCGATGGGAGTCTTCAAGATTACATGTTCGAGGAAAGTGTTTGCTTACTACTTCGGGCCTCATGGTTCAAACCGTTAACTGTTGAGGGTCATGTAGAACATGAAGATGTCTATGAATACGTTGAAGATTTCTATGAAGACGAGGATGAGGATGATGACATAGATGAAGCTTACTATGGCGGTTCATCAAGTTTTCGCATTGGAAACCGCAGATGGGGAGACAATGGTTATGTTAGGGCTGGGCGTCAAGAAGCTCGGCCGGTTCACCGGCCAAACTTCCAAGATTCAGGAGCAAGTTCATCGCGCGAGCCGAAGAAGAAAGAGGCTGGGAAAAGTGTAACAGGAAGACGAGCAAAGAGGGCACTGAAAAGGGAAGCTGCTGATAAGGCAGCTGAAGCAAAGCATCAGCAGCATTTGATAAGGTTGGGTAGGAAGTGA 741 0.4642 MASSVVNIEDEQVLANDFQDLSIKDLGEKGSEAEIHRGGFGNHGGICAICLDKIVLQETALVKGCEHAYCVICILRWASYNPKVTCPQCKHPFEFLNVHRSLDGSLQDYMFEESVCLLLRASWFKPLTVEGHVEHEDVYEYVEDFYEDEDEDDDIDEAYYGGSSSFRIGNRRWGDNGYVRAGRQEARPVHRPNFQDSGASSSREPKKKEAGKSVTGRRAKRALKREAADKAAEAKHQQHLIRLGRK 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1286g00005 246 MobiDBLite consensus disorder prediction 201 239 - -
Gabi1286g00005 246 Pfam Ring finger domain 47 90 IPR001841 -
Gabi1286g00005 246 ProSitePatterns Zinc finger RING-type signature. 65 74 IPR017907 -
Gabi1286g00005 246 CDD RING-HC_Topors 47 93 - -
Gabi1286g00005 246 MobiDBLite consensus disorder prediction 182 246 - -
Gabi1286g00005 246 ProSiteProfiles Zinc finger RING-type profile. 47 90 IPR001841 -
Gabi1286g00005 246 SUPERFAMILY RING/U-box 46 96 - -
Gabi1286g00005 246 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 41 153 IPR013083 -
Gabi1286g00005 246 SMART ring_2 47 89 IPR001841 -
Gabi1286g00005 246 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 4 246 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1286g00005 3 246 C3H Transcription Factor Family AT5G19430 57.480 6.65e-90 264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1286g00005 - - gmx:100785472 365.925