Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1282g00006 ATGGAAGACAAAGTTGCAATAAAAAAATTGCTGCAAGTTGAGGAAAAGCTATATGATAATAATACTATGGGATCTACACTTCTCAGTTTGAGCCTGAATAATTCAGAACATTCTCTCCACCAAATTCAAGGACAACCCCAAACCCAAATGGGTATGCTGCGAATCAAGCTTGAGGAAGCGAAGAAAGAGAATGAAAATTTAAGAGCTATGCTAAATCAGGTTAATGAACACTATACTGCTCTTCAGAATCGCTTGCTTTTGACGCTGCAGCAGCATCAACTATCTTCATTATCTCCAAATAATCACCACTTGCAGCAGGGAAATGGACAACATGTTGAGAAACCAGTGTTACCCACTAGACAGTTCTTAAATATTGTTGAGACTTCACCTTCAGATGGCAGCAAAACAGAAGGATATGCCTCCCTTGAAAACGTTGAGAATAACATGTACAGAAACCTTGCATATGCGTACAATGTTGAAGGTAAAATCAACAGCCAAATAATACCGCAAGAAGCGAAACGCATAGAAGATCAAGCACATGGTTCTTGCATGAAAGCTAGAGTTTCCATACGGGCACGATCTGATTTTTCTTTGATGGGAGATGGGTGTCAATGGAGAAAGTATGGACAAAAGACATCCAAGGGCAACCCTTGTCCCCGTGCCTATTATCGTTGTAGCATGGGAACTGCATGTCCAGTTCGTAAGCAGGTGCAAAGATGTTTTAAGGATGAGACAGTTCTCATCACAACCTATGAAGGAAACCATAATCATCCACTCCCACCAGCAGCAAGACCTATGGCAAGCTCAACATCAGCTGCATTAAACATGTTCCTTTCTGGCTCAACCACAAGTTTACATGGCAGCAGTGTGTCAAATTTAAGCCTCTTCTCTTCATTATCTAATACTGCTTCCACTGCTTTAGCTACTTTCTCCCCATCTGCATCATGTCCCACAGTAACACTGGACTTAACCCAACCCACTAATGACTACTTGCAATTCCAAACGGCCACTTCATCAAACCACAGACAATCATTGTTCCCATTGCCAGAGTACGGTTACACTCAAACATTTGAGGGGTTGAACTTGTGTTCTAAGCTTCCAACTATGGTAACTGCAGAGAAAAACCTTGCCTTGGTGGATGTTGTGAGTGAAGCTATAACCAAAGATCCTTCTCTCAAGGCAGCATTATTTGCAGCCATTTCCTCACTCAATGGAGATTCTCAGAACATCAATAACCACAACCAACCTAGTAAGAGTGGATATGATCCTTGTTCTAAGATGCCTTCAATACCACCACATCAACCCTACACTACTCAATTGATTTAG 1326 0.4155 MEDKVAIKKLLQVEEKLYDNNTMGSTLLSLSLNNSEHSLHQIQGQPQTQMGMLRIKLEEAKKENENLRAMLNQVNEHYTALQNRLLLTLQQHQLSSLSPNNHHLQQGNGQHVEKPVLPTRQFLNIVETSPSDGSKTEGYASLENVENNMYRNLAYAYNVEGKINSQIIPQEAKRIEDQAHGSCMKARVSIRARSDFSLMGDGCQWRKYGQKTSKGNPCPRAYYRCSMGTACPVRKQVQRCFKDETVLITTYEGNHNHPLPPAARPMASSTSAALNMFLSGSTTSLHGSSVSNLSLFSSLSNTASTALATFSPSASCPTVTLDLTQPTNDYLQFQTATSSNHRQSLFPLPEYGYTQTFEGLNLCSKLPTMVTAEKNLALVDVVSEAITKDPSLKAALFAAISSLNGDSQNINNHNQPSKSGYDPCSKMPSIPPHQPYTTQLI 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1282g00006 441 MobiDBLite consensus disorder prediction 407 422 - -
Gabi1282g00006 441 Pfam WRKY DNA -binding domain 201 258 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi1282g00006 441 SUPERFAMILY WRKY DNA-binding domain 192 260 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gabi1282g00006 441 Coils Coil 50 84 - -
Gabi1282g00006 441 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 46 415 IPR044810 GO:0003700
Gabi1282g00006 441 SMART WRKY_cls 199 259 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi1282g00006 441 MobiDBLite consensus disorder prediction 407 441 - -
Gabi1282g00006 441 Gene3D WRKY domain 183 261 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gabi1282g00006 441 ProSiteProfiles WRKY domain profile. 194 260 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi1282g00006 441 FunFam probable WRKY transcription factor 31 184 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1282g00006 Gabi-Chr1282 84904 89383 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1282g00006 53 325 WRKY Transcription Factor Family AT4G04450 41.234 4.81e-65 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gabi1282g00006 WRKY 2.3e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1282g00006 - - gmx:100781603 498.049