Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1282g00005 ATGGAAGACAAAGTTGCAATAAAAAAATTGCTGCAAGTTGAGGAAAAGCTATATGATAATAATACTATGGGATCTACACTTCTCAGTTTGAGCCTGAATAATTCAGAACATTCTCTCCACCAAATTCAAGGACAACCCCAAACCCAAATGGGTATGCTGCGAATCAAGCTTGAGGAAGCGAAGAAAGAGAATGAAAATTTAAGAGCTATGCTAAATCAGGTTAATGAACACTATACTGCTCTTCAGAATCGCTTGCTTTTGACGCTGCAGCAGCATCAACTATCTTCATTATCTCCAAATAATCACCACTTGCAGGGAAATGGACAACATGTTGAGAAACCAGTGTTACCCACTAGACAGTTCTTAAATATTGTTGAGACTTCACCTTCAGATGGCAGCAAAACAGAAGGATATGCCTCCCTTGAAAACGTTGAGAATAACATGTACAGAAACCTTGCATATGCGTACAATGTTGAAGGTAAAATCAACAGCCAAATAATACCGCAAGAAGCGAAACGCATAGAAGATCAAGCACATGGTTCTTGCATGAAAGCTAGAGTTTCCATACGGGCACGATCTGATTTTTCTTTGATGGGAGATGGGTGTCAATGGAGAAAGTATGGACAAAAGACATCCAAGGGCAACCCTTGTCCCCGTGCCTATTATCGTTGTAGCATGGGAACTGCATGTCCAGTTCGTAAGCAGGTGCAAAGATGTTTTAAGGATGAGACAGTTCTCATCACAACCTATGAAGGAAACCATAATCATCCACTCCCACCAGCAGCAAGACCTATGGCAAGCTCAACATCAGCTGCATTAAACATGTTCCTTTCTGGCTCAACCACAAGTTTACATGGCAGCAGTGTGTCAAATTTAAGCCTCTTCTCTTCATTATCTAATACTGCTTCCACTGCTTTAGCTACTTTCTCCCCATCTGCATCATGTCCCACAGTAACACTGGACTTAACCCAACCCACTAATGACTACTTGCAATTCCAAACGGCCACTTCATCAAACCACAGACAATCATTGTTCCCATTGCCAGAGTACGGTTACACTCAAACATTTGAGGGGTTGAACTTGTGTTCTAAGCTTCCAACTATGGTAACTGCAGAGAAAAACCTTGCCTTGGTGGATGTTGTGAGTGAAGCTATAACCAAAGATCCTTCTCTCAAGGCAGCATTATTTGCAGCCATTTCCTCACTCAATGGAGATTCTCAGAACATCAATAACCACAACCAACCTAGTAAGAGTGGATATGATCCTTGTTCTAAGATGCCTTCAATACCACCACATCAACCCTACACTACTCAATTGATTTAG 1323 0.415 MEDKVAIKKLLQVEEKLYDNNTMGSTLLSLSLNNSEHSLHQIQGQPQTQMGMLRIKLEEAKKENENLRAMLNQVNEHYTALQNRLLLTLQQHQLSSLSPNNHHLQGNGQHVEKPVLPTRQFLNIVETSPSDGSKTEGYASLENVENNMYRNLAYAYNVEGKINSQIIPQEAKRIEDQAHGSCMKARVSIRARSDFSLMGDGCQWRKYGQKTSKGNPCPRAYYRCSMGTACPVRKQVQRCFKDETVLITTYEGNHNHPLPPAARPMASSTSAALNMFLSGSTTSLHGSSVSNLSLFSSLSNTASTALATFSPSASCPTVTLDLTQPTNDYLQFQTATSSNHRQSLFPLPEYGYTQTFEGLNLCSKLPTMVTAEKNLALVDVVSEAITKDPSLKAALFAAISSLNGDSQNINNHNQPSKSGYDPCSKMPSIPPHQPYTTQLI 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1282g00005 440 Gene3D WRKY domain 182 260 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gabi1282g00005 440 MobiDBLite consensus disorder prediction 406 440 - -
Gabi1282g00005 440 FunFam probable WRKY transcription factor 31 183 260 - -
Gabi1282g00005 440 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 46 414 IPR044810 GO:0003700
Gabi1282g00005 440 SMART WRKY_cls 198 258 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi1282g00005 440 SUPERFAMILY WRKY DNA-binding domain 191 259 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gabi1282g00005 440 Coils Coil 50 84 - -
Gabi1282g00005 440 Pfam WRKY DNA -binding domain 200 257 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi1282g00005 440 MobiDBLite consensus disorder prediction 406 421 - -
Gabi1282g00005 440 ProSiteProfiles WRKY domain profile. 193 259 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1282g00005 Gabi-Chr1282 84904 89383 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1282g00005 53 324 WRKY Transcription Factor Family AT4G04450 41.234 5.32e-65 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gabi1282g00005 WRKY 2.3e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1282g00005 - - gmx:100781603 500.745