Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1278g00027 ATGGCGAAATTGAAGTTGTTGTCAGCTCTAGACACGGCGAGGACACAGTACTATCACTTCAAGGCCATAATAATAGCAGGGATGGGGCTATTCACCGATGCATACGATCTCTTCTCCATCACTCTCATCGTGAGGATGATAGGAAGGACATATTACGGCGACCGCCACGGCGACAACCAATACAAGACCCCACCCGTCGTGGTCGCCGCCTTGATAGCCGTCGCACTGTTAGGGATGGTAATCGGTCAACTCGTATTCGGAAGGCTCGGGGATCTCAAAGGGAGGCGCTACGTTTACGGATTGGCCTTGTTGTTGATGATCATGAGCTCCTTAGCTTCTGGCTTCTCCGTTTGCATAAGAAGACCATGCGTTCTCCTTTCTCTTGGCTTATTCAGGTTCTTTCTGGGGTTGGGAATTGGAGGAGACTACCCTCTCTCATCTACCATAATGTCTGAGTTTGCAAACAAAAGGACGCGAGGGTCTTTCATAGCGGCGGTGTTTTCCATGCAAGGATTCGGGATATTGGCCAGCGCCACCGTTACCATGGTGGTGTGCTCCATATTCCGCCGCGAAGAGGACGCTGACTTTGCATGGAGGTTGATACTGATGATAGGTTCAGTTCCGGCAGGCTTGACGTACTACTGGCGTATGAAGATGCCCGAAACTGCCAGGTATACAGCGCTAGTGGAACAAGACGTTACGCAAGCAGTAAAGGACATGGAGAGAGTCCTAGAGTTCTCAATGAGCCAGATTTCTGGAGAAAATACATTGCCACCAGCGCATCCGTACCCGCTCCTTTCCAGGGAATTTTTCCGTCGTCATGGTCGTGATCTTTTTGCTTGTTCCTCTAATTGGTTTCTGTTGGACATTGTGTTCTACAGCAATGTTCTGTTCCAGAGTCAAATATACAAGCACTTCCTCGAGCTCGACGACAATCACCAAGTGAATGTGTATCATGAGGTTTTCCATGTTGCCAAGATCCAAGCCATTATTGCTGTATGTTCCACCATTCCTGGCTACTTCTTCTCAGTGTACTTCATTGACCGTGTTGGAAGAGTCAAAATCCAAATGATGGGCTTTTTCTTCATGGCATTGATTTTTTGGGCCATAGGGATTCCTTATTACTCATACTGGACCACCGAGAAAAACAAAAATAATAAAGGTTTTATTGTACTCTATAGCCTTGCTTTCTTCTTTGCCAATTTTGGACCCAACACCACCACTTTCATAGTCCCAGCTGAACTATTCCCAGCCAGGTTTAGATCAACATGTCATGGCATTTCTGGGGCTTTTGGCAAGGTTGGTGCAATCATTGGAACCGTTGGATTTCTATGGGCTTCACATAAAGACGAGGAGGACGGATATCCCAAGGCAATTGGAATGGAAGTCTCCTTGGTCATACTTGGAGTGGTGTGCATAGTTGGAATGTTGGTTACCTACTTTTTCACCATGGAAACCATGGGAAGATCTTTGGAAGAGAATGAGATTGAGCCTTGTGAACATGAGGAGTTTAAATGGAGCACCCCGAATTTTGTTAAGGATTTAATTTATATGGAACCATCACAACACACAAACTTTCTCTCTCAGAAAATTGCAGAACCTCCACTTTCACAACACACAAACTTCGTGGAACTTCACATCGTTCAGACACCGGTTGACCGACGTTCCTCCGCCGTTGACTACCATTGTCCGTTGGAAATTTTTGGCGACCCACCTACCGTTGTGCTCGTCTCAGCCGTGCATTCGTTTGGTCTAAGTCTAGTTGTTGCCTGTTTCTTTTATTTGGTGATTATAAACTCTCCTATCTTTTCTGTTTCTGGATCTCCGACTAGCCCCAAGTCAGATCCTCCTATTGTTACCAATTATATCCTTGCTCCACTTAATGTGGATAACTTGGATGGCTCAAACTATGATTCGTGGACTTTAGATCTGCAACTTTGGTTGGATGGGCATAATTATACAGCTAACCTAAATACTCAAGCTGGTTTTATTGTGGCTGGTGAACGCACGTGA 2013 0.458 MAKLKLLSALDTARTQYYHFKAIIIAGMGLFTDAYDLFSITLIVRMIGRTYYGDRHGDNQYKTPPVVVAALIAVALLGMVIGQLVFGRLGDLKGRRYVYGLALLLMIMSSLASGFSVCIRRPCVLLSLGLFRFFLGLGIGGDYPLSSTIMSEFANKRTRGSFIAAVFSMQGFGILASATVTMVVCSIFRREEDADFAWRLILMIGSVPAGLTYYWRMKMPETARYTALVEQDVTQAVKDMERVLEFSMSQISGENTLPPAHPYPLLSREFFRRHGRDLFACSSNWFLLDIVFYSNVLFQSQIYKHFLELDDNHQVNVYHEVFHVAKIQAIIAVCSTIPGYFFSVYFIDRVGRVKIQMMGFFFMALIFWAIGIPYYSYWTTEKNKNNKGFIVLYSLAFFFANFGPNTTTFIVPAELFPARFRSTCHGISGAFGKVGAIIGTVGFLWASHKDEEDGYPKAIGMEVSLVILGVVCIVGMLVTYFFTMETMGRSLEENEIEPCEHEEFKWSTPNFVKDLIYMEPSQHTNFLSQKIAEPPLSQHTNFVELHIVQTPVDRRSSAVDYHCPLEIFGDPPTVVLVSAVHSFGLSLVVACFFYLVIINSPIFSVSGSPTSPKSDPPIVTNYILAPLNVDNLDGSNYDSWTLDLQLWLDGHNYTANLNTQAGFIVAGERT 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1278g00027 670 ProSitePatterns Sugar transport proteins signature 2. 134 159 IPR005829 GO:0016020|GO:0022857|GO:0055085
Gabi1278g00027 670 PANTHER SOLUTE CARRIER FAMILY 22 MEMBER 20 493 - -
Gabi1278g00027 670 CDD MFS_PhT 23 486 - -
Gabi1278g00027 670 SUPERFAMILY MFS general substrate transporter 10 495 IPR036259 -
Gabi1278g00027 670 ProSiteProfiles Major facilitator superfamily (MFS) profile. 22 487 IPR020846 GO:0022857
Gabi1278g00027 670 Gene3D MFS general substrate transporter like domains 18 509 IPR036259 -
Gabi1278g00027 670 FunFam Inorganic phosphate transporter 1-6 18 507 - -
Gabi1278g00027 670 Pfam Sugar (and other) transporter 24 494 IPR005828 GO:0016020|GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1278g00027 Gabi-Chr1278 152323 158058 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1278g00027 4 503 Inorganic Solute Cotransporters AT1G20860 62.572 0.0 630
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1278g00027 K08176 - gmx:100797683 784.252