Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1278g00013 ATGTGGGGCATGGGAGGAATAGGTAAAACTACTATTGCCAATGCTTTGTTTGCCAAATTATCTTCTCAATATGAAGGTAGCTGCTTCTTGGCAAATGTAAGGGAAGAATTCCAAAAGCAAGGCCCTAGTTGTTTACGTAATAAGCTTCTTTCTGAGGTACTAGAGGATGTAAATCTCCATATTAGCACCACCACAGTAAGATCCACTTTTGTTACGAGGAGGCTTAGTAGAAAAAAGGTTCTAATTGTGCTTGATGATGTGGACCATAGGGAGAAACTAAAATATCTTGCTGCAAAACATGATTGCTTGGGACCAGGTAGTAGAGTCATTGTCACTACCAGAGATAAGCATGTCCTTAGCGAAGGGGTGGATGAAATCTATGAGGTCAAGGGATTGTCCCTTCATCATGCTGTTAAACTTTTCAGTTTAAATGCCTTCAACAAAACCTATCCTGAAACGGGGTTTGAAATGCCATCTAAAATGGTTGTTGATCATGCAAATGGCAATCCATTGGCTTTAAAAGTTTTAGGTTCAGTTCTCCATTCCAGAAATGAGCAACAATGGGACAGTGCTCTGAGAAAACTCATGAAGGTCCCTAATGCGGAAATTCAGAATGTGTTAAGATGGAGTTATGATGGATTAGATGATGAAGAAAAAAATATGTTTCTGGACATTGCATGCTTTTTCCGAGGAGAGAATAAAGAAGATGTTATGAGGCTACTAGATGTTTTTGGTTTCTTTGCAGATATTGGAATAAGAAACCTTTTAGACAAAGCTCTAATAACTTTTTCAGATGCCAATGAAGTGTGCATGCATGATTTGATACAAGAAATGGGCAAGGAAATTGTTCATCAGGAATCTATCAAAGACCCTGGAAGGCGTAGCCGATTGTGGGATCCAGAGGAAATCTATGATGTATTGAAAAACAATAGGGGAACTGATGCAGTTGAAGGCATGATCTTAGATGTGTCTCAAATAAGAGTCTTTCCACTGAGCTATGAGACCTTCTCAAGAATGATCAATCTAAGATTTATCAAATTCTATATGGGCAGGGGTAGGACATGCAATTTGCTCCTTCCTTCAGGTCTTGAATCATTGTCTAATAAATTGAAGTTCCTTCACTGGGATGGATACCCTTCCAAGTCTTTGCCCTCAACTTTTTGTCCTGACAACCTTGTTGTGCTTTCCATGATGGGTAGCCATGTTGAAAAACTTTGGGATGGAATCAAGAGTCTTGCAAGCTTGAAAGAGATCAACCTCCGTGCTTGCAAGAATTTAACTGATCTCCCAGATTTATCTCTAGCGCCAAATCTTGAAAGTGTAGATCTTTCTCATTGCACAAGTCTGCTTCATGTTCACTCATCTATCCAATATATCAACAAGCTTCTTTTGTTTAACCTGGAATCCTGCAAGAACCTTAAGAGTCTTCCAAGTAGCATTCACTTGTTTTCTCTTAAAATGTTCATTCTCAAAGGCTGTTCAAGTCTTGATGAGTTTTCAGTGACTTCAGAGAACATGACACGCCTGGACTTAAGAGGGACAGCAATAGAACATTTTCCAGCATCAGTTTGGCAGCATCTGAGCCAGCTTGTTTACTTGAATCTGGAATCCTGCAATAAGCTTAAGAGTCTTACATGCAACATTCACTTGTTATCTCTTAAAAGTCTCAATCTTAGAGATTGTTCAAATCTTGAAGTGTTTTCTCTGACTTCGGAGAACATGGAGTACCTGAATTTGGGAGGGACATCAATAAAAGAATTGCCAAAATCTGTTTGGCGCAACAACAAGCTTTTTACTTTGGTTCTTCGTTCCTGTAAAAGACTTGTGAGTTTTCCTGACAGACCAAAACTTGATGAATTGCCTCTCATTCTCAAAGAGCTATACTCTTCTGAAAGGTCAAATGTGGATGAACCATGGACTTTGTCATCCTTAGCAGATTTATCACTAAAAGGAAGCAGTATTGAGAATTTACCTGCAAGCATCAAAGATCTTCCAAGATTGAAAAAACTTACCTTGACTAAGTGCAAGAAGCTTCGGTCTCTACCAAGCCTTCCACCATCCTTGGAAGACTTATCCCTAGATGAAAGCAATATTGAGTGTTTACCTGTAAGTATCAAAGATCTTTATCATTTGAAAAAACTCACCTTAGTTAACTACAATAAGCTTTTGTTTCCACCAGAGCTTCCACAATCCTTGAAAACTACATCACTAAGTGAAAGTAAAACTGATTCCTTTCTTGGGAGCATGAAAGATTTTTCTCATCTACAAAAGCTTCCTCTGATTAAGTGGAAAAGGCTTCATTCTCTACCAGAGCTTCCACCATTCTTGGAAGATTTATCACTAGATGCAAGCAATATTGAATGCATACCTGTAAGCATCAAAGATCTTTCTCATCTGAGAAAACTAGCCTTAATCAAGTGCCAGAAGCTTCAATATTTACCAGATCTTCCACCATCCTTGGAAGATTTGTCTGTAAATGAATGCAATATTGAGAGCTTGCCAATGAACATCAAAGATCTTTCTCATTTGCGAAAAATCACCTTACTTGAGTGCAAGAGGCTCAGGGCTATACCAGAGCTCCCCCCATGCCTGCAATTGTTTTGTGCAGCTGACTGCAGATCACTCGAGTTTGTTCCAAGTTCAAAGACTGTCTTAATACAAGATAGGCATGCATTCTATTACAATTGCATAAACTTGGATCACAATTCGCGCAACAATATCATTGCAGATGCACCCTTTGAAGCAGCTTTTACTTCTTTGCAAGAAGGAACACCTGTGGGACCTCTCATATCTATTTGTTTGCCAGGAGCTGAAATCCCAGACTGGTTCAGCTACCAAACAACAAATTCTTCACTGGACATAGAAATTCCTCAACAGTGGTTCATTGATTCAAAGTTCTTAGGCTTTGCTCTATGCCTTGTAATTGGTGGTTTCCAGCAAAACAGTTATGAAGGCTATGATCCAGATCTTAATTGTTATCACTTTGTCAAGCCTGCTGGTAACTCTGATCCCAATGTTCCCTTTCTTGGCCATTGCACAACCATAATGCAGGTGCCACGAGGTTTTAATTCAGATCATATATTCATATGCTATTATCCGGCTTTTAATGTTTCCATAATGCAAGATTTCAAGGATTTAGCCAAGTACTATGATTCTAACAACCTGAAGCTAAGAATCATTTTCAAATTTAAGGGTCCATCTCAAAGGTTGGACATTGTAAAGAAGTGTGGGGTCAGACCACTATTGATTGCTAATACTGAAAGGCTTCATGTTGAAAGTGAACTACAACATGAAGAAAAGGAAGTGTTAAAGTGA 3315 0.3888 MWGMGGIGKTTIANALFAKLSSQYEGSCFLANVREEFQKQGPSCLRNKLLSEVLEDVNLHISTTTVRSTFVTRRLSRKKVLIVLDDVDHREKLKYLAAKHDCLGPGSRVIVTTRDKHVLSEGVDEIYEVKGLSLHHAVKLFSLNAFNKTYPETGFEMPSKMVVDHANGNPLALKVLGSVLHSRNEQQWDSALRKLMKVPNAEIQNVLRWSYDGLDDEEKNMFLDIACFFRGENKEDVMRLLDVFGFFADIGIRNLLDKALITFSDANEVCMHDLIQEMGKEIVHQESIKDPGRRSRLWDPEEIYDVLKNNRGTDAVEGMILDVSQIRVFPLSYETFSRMINLRFIKFYMGRGRTCNLLLPSGLESLSNKLKFLHWDGYPSKSLPSTFCPDNLVVLSMMGSHVEKLWDGIKSLASLKEINLRACKNLTDLPDLSLAPNLESVDLSHCTSLLHVHSSIQYINKLLLFNLESCKNLKSLPSSIHLFSLKMFILKGCSSLDEFSVTSENMTRLDLRGTAIEHFPASVWQHLSQLVYLNLESCNKLKSLTCNIHLLSLKSLNLRDCSNLEVFSLTSENMEYLNLGGTSIKELPKSVWRNNKLFTLVLRSCKRLVSFPDRPKLDELPLILKELYSSERSNVDEPWTLSSLADLSLKGSSIENLPASIKDLPRLKKLTLTKCKKLRSLPSLPPSLEDLSLDESNIECLPVSIKDLYHLKKLTLVNYNKLLFPPELPQSLKTTSLSESKTDSFLGSMKDFSHLQKLPLIKWKRLHSLPELPPFLEDLSLDASNIECIPVSIKDLSHLRKLALIKCQKLQYLPDLPPSLEDLSVNECNIESLPMNIKDLSHLRKITLLECKRLRAIPELPPCLQLFCAADCRSLEFVPSSKTVLIQDRHAFYYNCINLDHNSRNNIIADAPFEAAFTSLQEGTPVGPLISICLPGAEIPDWFSYQTTNSSLDIEIPQQWFIDSKFLGFALCLVIGGFQQNSYEGYDPDLNCYHFVKPAGNSDPNVPFLGHCTTIMQVPRGFNSDHIFICYYPAFNVSIMQDFKDLAKYYDSNNLKLRIIFKFKGPSQRLDIVKKCGVRPLLIANTERLHVESELQHEEKEVLK 1104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1278g00013 1104 PRINTS Disease resistance protein signature 74 88 - -
Gabi1278g00013 1104 PRINTS Disease resistance protein signature 166 180 - -
Gabi1278g00013 1104 PRINTS Disease resistance protein signature 548 564 - -
Gabi1278g00013 1104 SUPERFAMILY L domain-like 573 866 - -
Gabi1278g00013 1104 Gene3D Ribonuclease Inhibitor 505 687 IPR032675 -
Gabi1278g00013 1104 Gene3D Ribonuclease Inhibitor 310 504 IPR032675 -
Gabi1278g00013 1104 Gene3D Ribonuclease Inhibitor 688 890 IPR032675 -
Gabi1278g00013 1104 Pfam NB-ARC domain 2 199 IPR002182 GO:0043531
Gabi1278g00013 1104 Pfam C-JID domain 934 1079 IPR045344 -
Gabi1278g00013 1104 SUPERFAMILY L domain-like 271 621 - -
Gabi1278g00013 1104 Gene3D - 1 126 IPR027417 -
Gabi1278g00013 1104 Pfam Leucine Rich Repeat 391 410 IPR011713 -
Gabi1278g00013 1104 Gene3D - 132 215 IPR042197 -
Gabi1278g00013 1104 FunFam Disease resistance protein RPS4 313 504 - -
Gabi1278g00013 1104 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 225 IPR027417 -
Gabi1278g00013 1104 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 1 544 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1278g00013 Gabi-Chr1278 56474 60365 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1278g00013 647 809 WRKY Transcription Factor Family AT4G12020 30.539 1.00e-06 51.2