Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1277g00002 ATGAAACCGTTCACTTCGTCACCATCATCCTCAAACTCCAACAAGGCCAAGAAGAAACAAACCGCCACAACACAAGAACAAGAACAACAAAAACAAAATGAAACTTCATGGGGAGGTAGGTACCTTGGCGTGAGGAGGAGGCCATGGGGAAGGTATGCAGCGGAGATTCGAGACCCCTCCACTAAAGAGAGGCATTGGCTCGGGACATTCGACACCGCAGAAGAGGCCGCCTTGGCTTATGACACGGCGGCCCGCTCCATGCGCGGGTCGCGTGCCCGAACCAACTTCGTCTACGTAGACACCCCGCCTGGTTCATCCGTCACTTCCATTCTTTCCCCGGAGCAACAAGCACAAATCCATCACCAACCTCAAGAATTCACATATTTCTCTGACCCGAACCAGTTTACCCAACAACCCGACCCGAATTCACAAACCTCAATTGGCGGGTACCCGGGGATGATGGGTTCGGTAACTTGGGCTGCACCGGAAGCGGCATCGTCCGGTGGCTATAGCTATAGTCATGGTTATGCTAATCAGATTGAAGGATGCAACAACACTGTTGATGGCTCCCATTTTCACCAACTGTTTGATGATGGTGAAACTCAGCTTCCACCATTGCCACCGGATATTACAAGCTCCATGGGTTATGAGATGGGTCATGGGTTTTATGGAGACAATGCTGGGTATTCTCATCAAAGTTCCGATGTTAGTACAAGCGGGTCGGGTTACCCGTATTTGGGGTTTGAATCGGGTGAATATGTGCATAGTCCCCTTTTCAGTGCAATGCCATCAGTGTCAGATAATGTGGGAAAAGAAACTGAGGATTTTAATTTGGGAAGCTCTTCTTATTTCTTCTGA 858 0.4942 MKPFTSSPSSSNSNKAKKKQTATTQEQEQQKQNETSWGGRYLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDTAARSMRGSRARTNFVYVDTPPGSSVTSILSPEQQAQIHHQPQEFTYFSDPNQFTQQPDPNSQTSIGGYPGMMGSVTWAAPEAASSGGYSYSHGYANQIEGCNNTVDGSHFHQLFDDGETQLPPLPPDITSSMGYEMGHGFYGDNAGYSHQSSDVSTSGSGYPYLGFESGEYVHSPLFSAMPSVSDNVGKETEDFNLGSSSYFF 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1277g00002 285 MobiDBLite consensus disorder prediction 1 37 - -
Gabi1277g00002 285 MobiDBLite consensus disorder prediction 1 42 - -
Gabi1277g00002 285 FunFam Ethylene-responsive transcription factor 2 40 98 - -
Gabi1277g00002 285 SMART rav1_2 40 103 IPR001471 GO:0003700|GO:0006355
Gabi1277g00002 285 PRINTS Ethylene responsive element binding protein signature 63 79 IPR001471 GO:0003700|GO:0006355
Gabi1277g00002 285 PRINTS Ethylene responsive element binding protein signature 41 52 IPR001471 GO:0003700|GO:0006355
Gabi1277g00002 285 Gene3D AP2/ERF domain 39 98 IPR036955 GO:0003700|GO:0006355
Gabi1277g00002 285 SUPERFAMILY DNA-binding domain 40 97 IPR016177 GO:0003677
Gabi1277g00002 285 ProSiteProfiles AP2/ERF domain profile. 40 97 IPR001471 GO:0003700|GO:0006355
Gabi1277g00002 285 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 21 168 - -
Gabi1277g00002 285 CDD AP2 40 96 IPR001471 GO:0003700|GO:0006355
Gabi1277g00002 285 Pfam AP2 domain 41 89 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1277g00002 Gabi-Chr1277 130432 131289 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1277g00002 23 268 AP2-EREBP Transcription Factor Family AT5G13910 42.520 4.14e-49 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gabi1277g00002 AP2 7.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1277g00002 K09286 - gmx:100809600 335.495