Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1276g00022 ATGATCACTGGGGAGAGACAGGCTGCAAGAATAAGAGGCTTATACCTTCAAACAATTCTAAGGCAAGATGTTAGTTTCTTTGATAAGGAAACTAATACTGGAGAGGTTGTTGGAAGAATGTCAGGTGATACTGTTCTTATTCAAGATGCCATGGGTGAGAAGGTGGGACAGTTCATACAGTTAATAGCAACTTTCTTCGGAGGTTTTGTAATAGCATTCTTCAGGGGATGGCTTCTAACAGTTGTCATGCTATCATGTATTCCACTTATAGTCTTGTCTGGTGCTATGATGAGCACGGTTATTGCAAAAACATCATCCAGTGGACAAACAGCTTATTCTAAAGCAGCAAGTATAGTAGAGCAGACAATAGGTTCTATCCGAACTGTTGCATCATTCACTGGGGAGAAGCAAGCTATAGCTAAATATGATCAGTCCTTAATCCAAGCTTACAAGACTGGAGTGCAAGAGGCAGTAGCTTCTGGTTTGGGGTTTGGTTCACTCTTTTTTGTTGTTATCTCCACTTATGGTTTGGCTGTATGGTTTGGTGGGAAAATGATAATAGAGAAAGGATATACAGGAGGGGAGGTTATGACTGTAATTTTTGCTGTTTTGACTGGCTCCATGTCTCTTGGGCAGGCATCTCCAAGCTTGAGTGCTTTTTCTGCAGGAAAAGCTGCAGCTTTTAAGATGTTTGAAACAATTGAAAGGAAGCCAGAAATTGATTCTTATGATGCTACTGGTCGGCAACTTGATGACATTCGTGGAGATATAGAACTTAGGGAGGTTTGCTTTAGTTATCCTACAAGACCAGATGAAATGATATTCAATGGATTTTCTCTTTCAATACCAAGTGGAACTACTGCAGCTCTGGTAGGGCAAAGTGGGAGTGGGAAATCAACAGTTGTTAGTTTGATAGAGAGGTTTTATGATCCACAGGGTGGTGAAGTTCTCATTGACGGTATCAACCTCAAAGAATTTCAACTGCAATGGATCAGACAGAAAATAGGCCTAGTTAGCCAGGAACCAGTTCTCTTTACTTGTAGCATTAAAGAGAATATTGCCTATGGCAAGGATGGTGCAACCGATGAAGAAATCAGAGCTGCATCAGAACTTGCTAATGCTGCCAAATTTATAGATAAACTTCCTCAGGGTCTAGACACAATGGTTGGTGAGCATGGAACTCAGCTCTCTGGGGGTCAAAAGCAGAGAATAGCAATAGCAAGAGCGATTTTGAAAGATCCAAGAATTCTACTTCTTGATGAGGCTACAAGCGCCCTTGATGCTGAATCTGAGAGAATTGTACAGGAGGCATTGGACAGAATAATGATCAACCGAACAACTGTCATTGTAGCCCACCGCTTAAGTACTATAAGGAATGCTGATACCATTGCTGTTATTCATCAAGGAAAAATAGTTGAAAGAGGTTCACATGCTGAGCTCACCAAGGATCCTGATGGAGCCTATAGCCAGCTCATTAGACTGCAAGAAATTAAGGGGTCAGAAAAGAATGTTGCAAATGACAAAGACAAGCCAGAAAGTAGACATTCTTTCTTACGATCTTTAAGTCAAGGGTCATCTGGAGTTGGAAACAGTGGTCATCACTCATTCTCAGCATCATTTGGACTTAAAGCTCCTCCTTCAACAGATTCTTTACCACCACCACCAGAAGTGCCACTTTCTCGCCTAGCTTATTTAAACAAGCCTGAGATTCCAGTCTTACTGATAGGGACTATAGCTGCAGTGATAGATGGAGTAATAATGCCCACTTTTGGGCTCTTGCTTTCCAAAATGATAACTATTTTCTATGAGCCAGCTGATAAACTTCGTAAAGATTCAAAAGTTTGGTCATTAGTATTTGTTGCTCTTGGTGTGGTATCATTACTCATTTTTCCATGTAGATTCTACTTTTTTGGTGTTGCTGGTGGTAAGTTGATCAAAAGGATCAGGAAAATGTGTTTTGAGAAAGTAGTTCACATGGAAGTAAGTTGGTTTGATGAGGCTGAGCATTCAAGTGGAGCACTAGGAGCAAGGCTCTCAACTGATGCAGCTTCTGTTCGATCTTTGGTTGGGGATGCACTTGGTTTGCTGGTTCAAAATAGTGCTACAGCAATAGCTGGCTTGGTAATTGCTTTTGAAGCGAGTTGGGAGCTTGCTTTTATAATCCTTGCTTTGGTGCCTATATTAGGACTAAATGGATATGTGCAATTCAAGTTCTTGAAAGGATTCAGTGCAGATGCAAAGAAATTGTATGAGGAAGCAAGTCAAGTGGCGAATGATGCTGTAGGGAGTATAAGAACAGTTGCTTCTTTCTGTGCTGAACAGAAGGTGATGGAATTATACCAGGAAAAATGTGAAGGACCAATTAAAACAGGCATAAGGCGAGGGATAATAAGTGGAATTGGTTTTGGGTTTTCATTCTTCACGCTGTATGCTGTTTATGCATGCAGTTTTTATGCAGGAGCTCGACTTGTAGAGGATGGCAAATCAACATTCTCAGATGTTTTCCGTGTCTTTTTTGCTCTCAGCATGGCAGCTATAGGAGTCTCGCAATCTGGCTCTTTGGTCCCTGATTCAACTAAAGCAAAAAGTGCTGCTGCTTCCATATTTGCTATTCTTGATAGGAAGTCACAAATAGACCCCAGTGATGACTCTGGAATGACATTGGAAGCAGTCAAGGGAGAAATTGAGTTGAAACATGTCAGTTTCAAGTATCCTACCAGACCTGATGTTCAAATATTCAGAGATCTTTGCTTGACCATTCATAGTGGCAAGACAGTTGCATTGGTTGGAGAAAGTGGAAGTGGAAAATCAACAGTGATCTCATTACTACAAAGATTTTATGACCCAGATTCAGGTCACATTACACTGGATGGAAAAGAAATCAAAATGCTACAAGTTAAATGGCTAAGACAACAAATGGGCCTGGTAAGCCAAGAGCCTGTGCTGTTTAATGACACCATCCGAGCCAATATTGCTTATGGAAAGGGAGGGGATGCAACTGAGGCAGAAATTGTAGCTGCAGCTGAACTGGCAAATGCCCACAAATTCATTAGTAGTTTGCAGAAGGGTTATGACACAATAGTAGGGGAAAGAGGACTTCAATTATCTGGGGGACAGAAGCAGCGGGTGGCAATTGCACGAGCCATAGTGAAGAATCCAAAGATATTACTACTAGATGAAGCCACTAGTGCACTTGATGCTGAGTCTGAAAAAGTGGTTCAGGATGCACTTGACCGAGTTATGGTTGATAGAACCACAATAGTAGTGGCACATAGGTTATCCACTATTAAGGGTGCAGATTTAATTGCAGTAGTTAAGAATGGGGTCATAGCAGAGAAGGGAAAACATGAAGCATTACTTAACAAGGGAGGTAACTACGCTTCCTTAGTAGCATTGCACACGAGTGCTTCTTCATCTTAG 3420 0.4132 MITGERQAARIRGLYLQTILRQDVSFFDKETNTGEVVGRMSGDTVLIQDAMGEKVGQFIQLIATFFGGFVIAFFRGWLLTVVMLSCIPLIVLSGAMMSTVIAKTSSSGQTAYSKAASIVEQTIGSIRTVASFTGEKQAIAKYDQSLIQAYKTGVQEAVASGLGFGSLFFVVISTYGLAVWFGGKMIIEKGYTGGEVMTVIFAVLTGSMSLGQASPSLSAFSAGKAAAFKMFETIERKPEIDSYDATGRQLDDIRGDIELREVCFSYPTRPDEMIFNGFSLSIPSGTTAALVGQSGSGKSTVVSLIERFYDPQGGEVLIDGINLKEFQLQWIRQKIGLVSQEPVLFTCSIKENIAYGKDGATDEEIRAASELANAAKFIDKLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERIVQEALDRIMINRTTVIVAHRLSTIRNADTIAVIHQGKIVERGSHAELTKDPDGAYSQLIRLQEIKGSEKNVANDKDKPESRHSFLRSLSQGSSGVGNSGHHSFSASFGLKAPPSTDSLPPPPEVPLSRLAYLNKPEIPVLLIGTIAAVIDGVIMPTFGLLLSKMITIFYEPADKLRKDSKVWSLVFVALGVVSLLIFPCRFYFFGVAGGKLIKRIRKMCFEKVVHMEVSWFDEAEHSSGALGARLSTDAASVRSLVGDALGLLVQNSATAIAGLVIAFEASWELAFIILALVPILGLNGYVQFKFLKGFSADAKKLYEEASQVANDAVGSIRTVASFCAEQKVMELYQEKCEGPIKTGIRRGIISGIGFGFSFFTLYAVYACSFYAGARLVEDGKSTFSDVFRVFFALSMAAIGVSQSGSLVPDSTKAKSAAASIFAILDRKSQIDPSDDSGMTLEAVKGEIELKHVSFKYPTRPDVQIFRDLCLTIHSGKTVALVGESGSGKSTVISLLQRFYDPDSGHITLDGKEIKMLQVKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIVAAAELANAHKFISSLQKGYDTIVGERGLQLSGGQKQRVAIARAIVKNPKILLLDEATSALDAESEKVVQDALDRVMVDRTTIVVAHRLSTIKGADLIAVVKNGVIAEKGKHEALLNKGGNYASLVALHTSASSS 1139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1276g00022 1139 CDD ABC_MTABC3_MDL1_MDL2 895 1130 - -
Gabi1276g00022 1139 SMART AAA_5 922 1115 IPR003593 GO:0016887
Gabi1276g00022 1139 SMART AAA_5 284 470 IPR003593 GO:0016887
Gabi1276g00022 1139 Gene3D - 247 496 IPR027417 -
Gabi1276g00022 1139 Gene3D - 885 1134 IPR027417 -
Gabi1276g00022 1139 MobiDBLite consensus disorder prediction 500 516 - -
Gabi1276g00022 1139 FunFam ABC transporter B family member 9 862 884 - -
Gabi1276g00022 1139 FunFam ABC transporter B family member 1 885 1134 - -
Gabi1276g00022 1139 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 257 493 IPR003439 GO:0005524
Gabi1276g00022 1139 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 250 495 IPR027417 -
Gabi1276g00022 1139 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 895 1132 IPR003439 GO:0005524
Gabi1276g00022 1139 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 574 860 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi1276g00022 1139 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 222 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi1276g00022 1139 CDD ABC_6TM_Pgp_ABCB1_D2_like 563 878 - -
Gabi1276g00022 1139 ProSitePatterns ABC transporters family signature. 1035 1049 IPR017871 GO:0005524|GO:0016887
Gabi1276g00022 1139 MobiDBLite consensus disorder prediction 500 533 - -
Gabi1276g00022 1139 FunFam ABC transporter B family member 1 553 861 - -
Gabi1276g00022 1139 FunFam ABC transporter B family member 1 247 496 - -
Gabi1276g00022 1139 Pfam ABC transporter 276 424 IPR003439 GO:0005524
Gabi1276g00022 1139 CDD ABC_MTABC3_MDL1_MDL2 257 495 - -
Gabi1276g00022 1139 MobiDBLite consensus disorder prediction 517 533 - -
Gabi1276g00022 1139 ProSitePatterns ABC transporters family signature. 396 410 IPR017871 GO:0005524|GO:0016887
Gabi1276g00022 1139 SUPERFAMILY ABC transporter transmembrane region 561 879 IPR036640 GO:0005524|GO:0016020
Gabi1276g00022 1139 Gene3D ABC transporter type 1, transmembrane domain 862 1136 IPR036640 GO:0005524|GO:0016020
Gabi1276g00022 1139 PANTHER ABC TRANSPORTER B FAMILY 1 498 IPR039421 -
Gabi1276g00022 1139 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 884 1132 IPR027417 -
Gabi1276g00022 1139 CDD ABC_6TM_Pgp_ABCB1_D1_like 1 230 - -
Gabi1276g00022 1139 SUPERFAMILY ABC transporter transmembrane region 2 241 IPR036640 GO:0005524|GO:0016020
Gabi1276g00022 1139 Gene3D ABC transporter type 1, transmembrane domain 2 861 IPR036640 GO:0005524|GO:0016020
Gabi1276g00022 1139 Pfam ABC transporter 915 1063 IPR003439 GO:0005524
Gabi1276g00022 1139 Pfam ABC transporter transmembrane region 573 843 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi1276g00022 1139 Pfam ABC transporter transmembrane region 2 208 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1276g00022 Gabi-Chr1276 205861 210801 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1276g00022 541 1139 Calmodulin-binding Proteins AT2G36910 38.689 9.16e-132 431
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1276g00022 K05658 - gmx:100800293 1877.06