Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1276g00021 ATGAAATTTGTGTACTTGGCTGCGGGTACCTTTGTTCACTTCATAAGAAACCCTGTTTGCAATATACTAGAGTTGACTTGCTGGATGATCACTGGGGAGAGACAGGCTGCAAGAATAAGAGGCTTATACCTTCAAACAATTCTAAGGCAAGATGTTAGTTTCTTTGATAAGGAAACTAATACTGGAGAGGTTGTTGGAAGAATGTCAGGTGATACTGTTCTTATTCAAGATGCCATGGGTGAGAAGGTGGGACAGTTCATACAGTTAATAGCAACTTTCTTCGGAGGTTTTGTAATAGCATTCTTCAGGGGATGGCTTCTAACAGTTGTCATGCTATCATGTATTCCACTTATAGTCTTGTCTGGTGCTATGATGAGCACGGTTATTGCAAAAACATCATCCAGTGGACAAACAGCTTATTCTAAAGCAGCAAGTATAGTAGAGCAGACAATAGGTTCTATCCGAACTGTTGCATCATTCACTGGGGAGAAGCAAGCTATAGCTAAATATGATCAGTCCTTAATCCAAGCTTACAAGACTGGAGTGCAAGAGGCAGTAGCTTCTGGTTTGGGGTTTGGTTCACTCTTTTTTGTTGTTATCTCCACTTATGGTTTGGCTGTATGGTTTGGTGGGAAAATGATAATAGAGAAAGGATATACAGGAGGGGAGGTTATGACTGTAATTTTTGCTGTTTTGACTGGCTCCATGTCTCTTGGGCAGGCATCTCCAAGCTTGAGTGCTTTTTCTGCAGGAAAAGCTGCAGCTTTTAAGATGTTTGAAACAATTGAAAGGAAGCCAGAAATTGATTCTTATGATGCTACTGGTCGGCAACTTGATGACATTCGTGGAGATATAGAACTTAGGGAGGTTTGCTTTAGTTATCCTACAAGACCAGATGAAATGATATTCAATGGATTTTCTCTTTCAATACCAAGTGGAACTACTGCAGCTCTGGTAGGGCAAAGTGGGAGTGGGAAATCAACAGTTGTTAGTTTGATAGAGAGGTTTTATGATCCACAGGGTGGTGAAGTTCTCATTGACGGTATCAACCTCAAAGAATTTCAACTGCAATGGATCAGACAGAAAATAGGCCTAGTTAGCCAGGAACCAGTTCTCTTTACTTGTAGCATTAAAGAGAATATTGCCTATGGCAAGGATGGTGCAACCGATGAAGAAATCAGAGCTGCATCAGAACTTGCTAATGCTGCCAAATTTATAGATAAACTTCCTCAGGGTCTAGACACAATGGTTGGTGAGCATGGAACTCAGCTCTCTGGGGGTCAAAAGCAGAGAATAGCAATAGCAAGAGCGATTTTGAAAGATCCAAGAATTCTACTTCTTGATGAGGCTACAAGCGCCCTTGATGCTGAATCTGAGAGAATTGTACAGGAGGCATTGGACAGAATAATGATCAACCGAACAACTGTCATTGTAGCCCACCGCTTAAGTACTATAAGGAATGCTGATACCATTGCTGTTATTCATCAAGGAAAAATAGTTGAAAGAGGTTCACATGCTGAGCTCACCAAGGATCCTGATGGAGCCTATAGCCAGCTCATTAGACTGCAAGAAATTAAGGGGTCAGAAAAGAATGTTGCAAATGACAAAGACAAGCCAGAAAGTAGACATTCTTTCTTACGATCTTTAAGTCAAGGGTCATCTGGAGTTGGAAACAGTGGTCATCACTCATTCTCAGCATCATTTGGTGTGCCCACATCAGTAGGCCTCTTGGAACCTGCTGGTGGAGGACTTAAAGCTCCTCCTTCAACAGATTCTTTACCACCACCACCAGAAGTGCCACTTTCTCGCCTAGCTTATTTAAACAAGCCTGAGATTCCAGTCTTACTGATAGGGACTATAGCTGCAGTGATAGATGGAGTAATAATGCCCACTTTTGGGCTCTTGCTTTCCAAAATGATAACTATTTTCTATGAGCCAGCTGATAAACTTCGTAAAGATTCAAAAGTTTGGTCATTAGTATTTGTTGCTCTTGGTGTGGTATCATTACTCATTTTTCCATGTAGATTCTACTTTTTTGGTGTTGCTGGTGGTAAGTTGATCAAAAGGATCAGGAAAATGTGTTTTGAGAAAGTAGTTCACATGGAAGTAAGTTGGTTTGATGAGGCTGAGCATTCAAGTGGAGCACTAGGAGCAAGGCTCTCAACTGATGCAGCTTCTGTTCGATCTTTGGTTGGGGATGCACTTGGTTTGCTGGTTCAAAATAGTGCTACAGCAATAGCTGGCTTGGTAATTGCTTTTGAAGCGAGTTGGGAGCTTGCTTTTATAATCCTTGCTTTGGTGCCTATATTAGGACTAAATGGATATGTGCAATTCAAGTTCTTGAAAGGATTCAGTGCAGATGCAAAGAAATTGTATGAGGAAGCAAGTCAAGTGGCGAATGATGCTGTAGGGAGTATAAGAACAGTTGCTTCTTTCTGTGCTGAACAGAAGGTGATGGAATTATACCAGGAAAAATGTGAAGGACCAATTAAAACAGGCATAAGGCGAGGGATAATAAGTGGAATTGGTTTTGGGTTTTCATTCTTCACGCTGTATGCTGTTTATGCATGCAGTTTTTATGCAGGAGCTCGACTTGTAGAGGATGGCAAATCAACATTCTCAGATGTTTTCCGTGTCTTTTTTGCTCTCAGCATGGCAGCTATAGGAGTCTCGCAATCTGGCTCTTTGGTCCCTGATTCAACTAAAGCAAAAAGTGCTGCTGCTTCCATATTTGCTATTCTTGATAGGAAGTCACAAATAGACCCCAGTGATGACTCTGGAATGACATTGGAAGCAGTCAAGGGAGAAATTGAGTTGAAACATGTCAGTTTCAAGTATCCTACCAGACCTGATGTTCAAATATTCAGAGATCTTTGCTTGACCATTCATAGTGGCAAGACAGTTGCATTGGTTGGAGAAAGTGGAAGTGGAAAATCAACAGTGATCTCATTACTACAAAGATTTTATGACCCAGATTCAGGTCACATTACACTGGATGGAAAAGAAATCAAAATGCTACAAGTTAAATGGCTAAGACAACAAATGGGCCTGGTAAGCCAAGAGCCTGTGCTGTTTAATGACACCATCCGAGCCAATATTGCTTATGGAAAGGGAGGGGATGCAACTGAGGCAGAAATTGTAGCTGCAGCTGAACTGGCAAATGCCCACAAATTCATTAGTAGTTTGCAGAAGGGTTATGACACAATAGTAGGGGAAAGAGGACTTCAATTATCTGGGGGACAGAAGCAGCGGGTGGCAATTGCACGAGCCATAGTGAAGAATCCAAAGATATTACTACTAGATGAAGCCACTAGTGCACTTGATGCTGAGTCTGAAAAAGTGGTTCAGGATGCACTTGACCGAGTTATGGTTGATAGAACCACAATAGTAGTGGCACATAGGTTATCCACTATTAAGGGTGCAGATTTAATTGCAGTAGTTAAGAATGGGGTCATAGCAGAGAAGGGAAAACATGAAGCATTACTTAACAAGGGAGGTAACTACGCTTCCTTAGTAGCATTGCACACGAGTGCTTCTTCATCTTAG 3546 0.4151 MKFVYLAAGTFVHFIRNPVCNILELTCWMITGERQAARIRGLYLQTILRQDVSFFDKETNTGEVVGRMSGDTVLIQDAMGEKVGQFIQLIATFFGGFVIAFFRGWLLTVVMLSCIPLIVLSGAMMSTVIAKTSSSGQTAYSKAASIVEQTIGSIRTVASFTGEKQAIAKYDQSLIQAYKTGVQEAVASGLGFGSLFFVVISTYGLAVWFGGKMIIEKGYTGGEVMTVIFAVLTGSMSLGQASPSLSAFSAGKAAAFKMFETIERKPEIDSYDATGRQLDDIRGDIELREVCFSYPTRPDEMIFNGFSLSIPSGTTAALVGQSGSGKSTVVSLIERFYDPQGGEVLIDGINLKEFQLQWIRQKIGLVSQEPVLFTCSIKENIAYGKDGATDEEIRAASELANAAKFIDKLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERIVQEALDRIMINRTTVIVAHRLSTIRNADTIAVIHQGKIVERGSHAELTKDPDGAYSQLIRLQEIKGSEKNVANDKDKPESRHSFLRSLSQGSSGVGNSGHHSFSASFGVPTSVGLLEPAGGGLKAPPSTDSLPPPPEVPLSRLAYLNKPEIPVLLIGTIAAVIDGVIMPTFGLLLSKMITIFYEPADKLRKDSKVWSLVFVALGVVSLLIFPCRFYFFGVAGGKLIKRIRKMCFEKVVHMEVSWFDEAEHSSGALGARLSTDAASVRSLVGDALGLLVQNSATAIAGLVIAFEASWELAFIILALVPILGLNGYVQFKFLKGFSADAKKLYEEASQVANDAVGSIRTVASFCAEQKVMELYQEKCEGPIKTGIRRGIISGIGFGFSFFTLYAVYACSFYAGARLVEDGKSTFSDVFRVFFALSMAAIGVSQSGSLVPDSTKAKSAAASIFAILDRKSQIDPSDDSGMTLEAVKGEIELKHVSFKYPTRPDVQIFRDLCLTIHSGKTVALVGESGSGKSTVISLLQRFYDPDSGHITLDGKEIKMLQVKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIVAAAELANAHKFISSLQKGYDTIVGERGLQLSGGQKQRVAIARAIVKNPKILLLDEATSALDAESEKVVQDALDRVMVDRTTIVVAHRLSTIKGADLIAVVKNGVIAEKGKHEALLNKGGNYASLVALHTSASSS 1181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1276g00021 1181 FunFam ABC transporter B family member 1 595 903 - -
Gabi1276g00021 1181 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 285 521 IPR003439 GO:0005524
Gabi1276g00021 1181 Gene3D ABC transporter type 1, transmembrane domain 598 903 IPR036640 GO:0005524|GO:0016020
Gabi1276g00021 1181 FunFam ABC transporter B family member 9 904 926 - -
Gabi1276g00021 1181 SMART AAA_5 312 498 IPR003593 GO:0016887
Gabi1276g00021 1181 SMART AAA_5 964 1157 IPR003593 GO:0016887
Gabi1276g00021 1181 Gene3D ABC transporter type 1, transmembrane domain 904 1178 IPR036640 GO:0005524|GO:0016020
Gabi1276g00021 1181 ProSitePatterns ABC transporters family signature. 424 438 IPR017871 GO:0005524|GO:0016887
Gabi1276g00021 1181 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 616 902 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi1276g00021 1181 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 278 523 IPR027417 -
Gabi1276g00021 1181 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 937 1174 IPR003439 GO:0005524
Gabi1276g00021 1181 CDD ABC_MTABC3_MDL1_MDL2 937 1172 - -
Gabi1276g00021 1181 SUPERFAMILY ABC transporter transmembrane region 603 921 IPR036640 GO:0005524|GO:0016020
Gabi1276g00021 1181 CDD ABC_6TM_Pgp_ABCB1_D1_like 1 258 - -
Gabi1276g00021 1181 FunFam ABC transporter B family member 1 275 524 - -
Gabi1276g00021 1181 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 926 1174 IPR027417 -
Gabi1276g00021 1181 CDD ABC_MTABC3_MDL1_MDL2 285 523 - -
Gabi1276g00021 1181 ProSitePatterns ABC transporters family signature. 1077 1091 IPR017871 GO:0005524|GO:0016887
Gabi1276g00021 1181 MobiDBLite consensus disorder prediction 528 544 - -
Gabi1276g00021 1181 Gene3D ABC transporter type 1, transmembrane domain 17 551 IPR036640 GO:0005524|GO:0016020
Gabi1276g00021 1181 Pfam ABC transporter 304 452 IPR003439 GO:0005524
Gabi1276g00021 1181 CDD ABC_6TM_Pgp_ABCB1_D2_like 605 920 - -
Gabi1276g00021 1181 PANTHER ABC TRANSPORTER B FAMILY 2 526 IPR039421 -
Gabi1276g00021 1181 Pfam ABC transporter 957 1105 IPR003439 GO:0005524
Gabi1276g00021 1181 FunFam ABC transporter B family member 1 927 1176 - -
Gabi1276g00021 1181 MobiDBLite consensus disorder prediction 527 561 - -
Gabi1276g00021 1181 Pfam ABC transporter transmembrane region 615 885 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi1276g00021 1181 Pfam ABC transporter transmembrane region 19 236 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi1276g00021 1181 SUPERFAMILY ABC transporter transmembrane region 3 269 IPR036640 GO:0005524|GO:0016020
Gabi1276g00021 1181 MobiDBLite consensus disorder prediction 545 561 - -
Gabi1276g00021 1181 Gene3D - 927 1176 IPR027417 -
Gabi1276g00021 1181 Gene3D - 275 524 IPR027417 -
Gabi1276g00021 1181 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 19 250 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1276g00021 Gabi-Chr1276 205861 210867 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1276g00021 19 529 Calmodulin-binding Proteins AT2G36910 40.583 1.36e-110 374
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1276g00021 K05658 - gmx:100800293 1927.14