Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1276g00020 ATGGCTGGGGATATTGTTATAAATGAAGATATAGCAAGTCTTGAACCAGTTGTAGATCTTGATAGCCAGAAAGATTCAAAGAAGAGCAAGTCCAAAGATGAAACAAAAAAGACAGTACCGTTGCACAAGCTTTTCTCATTTGCTGATCCTTTGGATTATTTGCTGATGTCTGTGGGGACAGTGGGTGCTATTGGGAATGGAATCTCCATGCCCTTAATGACTTTAATATTTGGAAATATGATCAATGCATTTGGAGGATCCACAAACTCAAAAGAAGTTGTGGATGAGGTTTCCAAGGTGTCTCTGAAATTTGTGTACTTGGCTGCGGGTACCTTTGTTGCTTCACTTTTGCAGTTGACTTGCTGGATGATCACTGGGGAGAGACAGGCTGCAAGAATAAGAGGCTTATACCTTCAAACAATTCTAAGGCAAGATGTTAGTTTCTTTGATAAGGAAACTAATACTGGAGAGGTTGTTGGAAGAATGTCAGGTGATACTGTTCTTATTCAAGATGCCATGGGTGAGAAGGTGGGACAGTTCATACAGTTAATAGCAACTTTCTTCGGAGGTTTTGTAATAGCATTCTTCAGGGGATGGCTTCTAACAGTTGTCATGCTATCATGTATTCCACTTATTGTCTTGTCTGGTGCTATGATGAGCACGGTTATTGCAAAAACATCATCCAGTGGACAAACAGCTTATTCTAAAGCAGCAAGTATAGTAGAGCAGACAATAGGTTCTATCCGAACTGTTGCATCATTCACTGGGGAGAAGCAAGCTATAGCTAAATATGATCAGTCCTTAATCCAAGCTTACAAGACTGGAGTGCAAGAGGCAGTAGCTTCTGGTTTGGGGTTTGGTTCACTCTTTTTTGTTGTTATCTCCACTTATGGTTTGGCTGTATGGTTTGGTGGGAAAATGATAATAGAGAAAGGATATACAGGAGGGGAGGTTGTGACTGTAATTTTTGCTGTTTTGACTGGCTCCATGTCTCTTGGGCAGGCATCTCCAAGCTTGAGTGCTTTTGCTGCAGGACAAGCTGCAGCCTTTAAGATGTTTGAAACAATTAAAAGGAAGCCAGAAATTGATTCTTATGATGCTACTGGTCGGCAACTTGATGACATTCGTGGAGATATAGATCTTAGGGAGGTTTGCTTTAGTTATCCTACAAGACCAGATGAAATGATATTCAATGGATTTTCTCTTTCAATACCAAGTGGAACTACTGCAGCTTTGGTAGGGCAAAGTGGGAGTGGGAAATCAACAGTTGTTAGTTTGATAGAGAGGTTTTATGATCCACAGGCTGGTGAAGTTCTCATTGACGGTATCAACCTCCAAGAATTTCAACTGAAATGGATCAGACAGAAAATAGGCCTAGTTAGCCAGGAACCAGTACTCTTTACTTGTAGCATTAAAGAGAATATTGCCTATGGCAAGGATGGTGCAACCGATGAAGAAATCAGAGCTGCATCAGAACTTGCTAATGCTGCCAAATTTATAGATAAACTTCCTCAGGGTCTAGACACAATGGTTGGTGAGCATGGAACTCAGCTCTCTGGGGGTCAAAAGCAGAGAATAGCAATAGCAAGAGCGATTTTGAAAGATCCAAGAATTCTACTTCTTGATGAGGCTACAAGCGCCCTTGATGCTGAATCTGAGAGAATTGTACAGGAGGCATTGGACAGAATAATGATCAACCGAACAACTGTCATTGTAGCCCACCGCTTAAGTACTATAAGGAATGCTGATACCATTGCTGTTATTCATCAAGGAAAAATAGTTGAAAGAGGTTCACATGCTGAACTCACCAAGGATCCTGATGGAGCCTATAGTCAGCTCATTAGACTGCAAGAAATTAAGGGGTCAGAAAAGAATGTTGCATATGACAAAGACAAGCCAGAAAGTATAGTTCATTCCGGAAGAATATCAAGTCAAAGACATTCTTTCTTACGATCTTTAAGTCAAGGGTCATCTGGAGTTGGAAACAGTGGTCATCACTCATTCTCAGCATCATTTGGTGTACCCACATCAGTAGGCCTCTTGGAACCTGCGGGTGGAGGACTTGAAGCTCCTCCTTCAACAGATTCTTTACCACCACCACCAGAAGTGCCACTTTCTCGCCTAGCTTATTTAAACAAGCCTGAGATTCCAGTCTTACTGATAGGGACTATAGCTGCAGTGATACATGGAGTAATAATGCCCACTTTTGGGCTCTTGCTTTCCAAAATGATAACTATTTTCTATGAGCCAGCTGATAAACTTCGTAAAGATTCAAAAGTTTGGTCATTAGTATTTGTTGCTCTTGGTGTGGTATCATTACTCATTTTTCCATGTAGATTCTACTTTTTTGGTGTTGCTGGTGGTAAGTTGATCAAAAGGATCAGGAAAATGTGTTTTGAGAAAGTAGTTCACATGGAAGTAAGTTGGTTTGATGAGGCTGAGCATTCAAGTGGAGCACTAGGAGCAAGGCTCTCAACTGATGCAGCTTCTGTTCGATCTTTGGTTGGGGATGCACTTGGTTTGCTGGTTCAAAATAGTGCTACAGCAATAGCTGGCTTGGTAATTGCTTTTGAAGCGAGTTGGCAGCTTGCTTTTATAATCCTTGCTTTGGTGCCTCTATTAGGACTAAATGGATATGTGCAATTCAAGTTCTTGAAAGGATTCAGTGCAGATGCAAAGAAATTGTATGAGGAAGCAAGTCAAGTGGCGAATGATGCTGTAGGGAGTATAAGAACAGTTGCTTCTTTCTGTGCTGAACAGAAGGTGATGGAATTATACCAGGAAAAATGTGAAGGACCAATTAAAACAGGCATAAGGCGAGGGATAATAAGTGGAATTGGTTTTGGGTTTTCATTCTTCACGCTGTATGCTGTTTATGCATGCAGTTTTTATGCAGGAGCTCGACTTGTAGAGGATGGCAAATCAACATTCTCAGATGTTTTCCGTGTCTTTTTTGCTCTCAGCATGGCAGCTATCGGAGTCTCGCAATCTGGCTCTTTGGTCCCTGATTCAACTAAAGCAAAAAGTGCTGCTGCTTCCATATTTGCTATTCTTGATAGGAAGTCACAAATAGACCCCAGTGATGACTCTGGAATGACATTGGAAGCAGTCAAGGGAGAAATTGAGTTGAAACATGTCAGTTTCAAGTATCCTACCAGACCTGATGTTCAAATATTCAGAGATCTTTGCTTGACCATTCATAGTGGCAAGACAGTTGCATTGGTTGGAGAAAGTGGAAGTGGAAAATCAACAGTGATCTCATTACTACAAAGATTTTATGACCCAGATTCAGGTCACATTACACTGGATGGAAAAGAAATCAAAATGCTACAAGTTAAATGGTTAAGACAACAAATGGGCCTGGTAAGCCAAGAGCCTGTGCTGTTTAATGACACCATCCGAGCCAATATTGCTTATGGAAAGGGAGGGGATGCAACTGAGGCAGAAATTATAGCTGCAGCTGAACTGGCAAATGCCCACAAATTCATTAGTAGTTTGCAGAAGGGTTATGACACAATAGTAGGGGAGAGAGGAGTTCAACTCTCTGGGGGACAGAAGCAGCGGGTGGCAATTGCACGAGCCATAGTGAAGAATCCAAAGATATTACTACTAGATGAAGCCACTAGTGCACTTGATGCTGAGTCTGAAAAAGTGGTTCAGGATGCACTTGACCGAGTTATGGTTGATAGAACCACAATAGTAGTGGCACATAGGTTATCCACTATTAAGGGTGCAGATTTAATTGCAGTAGTTAAGAATGGGGTCATAGCAGAGAAGGGAAAGCATGAAGCATTACTTAATAAGGGAGGTAACTACGCTTCCTTAGTAGCATTGCACACGAGTGCTTCTTCATCTTAG 3858 0.4145 MAGDIVINEDIASLEPVVDLDSQKDSKKSKSKDETKKTVPLHKLFSFADPLDYLLMSVGTVGAIGNGISMPLMTLIFGNMINAFGGSTNSKEVVDEVSKVSLKFVYLAAGTFVASLLQLTCWMITGERQAARIRGLYLQTILRQDVSFFDKETNTGEVVGRMSGDTVLIQDAMGEKVGQFIQLIATFFGGFVIAFFRGWLLTVVMLSCIPLIVLSGAMMSTVIAKTSSSGQTAYSKAASIVEQTIGSIRTVASFTGEKQAIAKYDQSLIQAYKTGVQEAVASGLGFGSLFFVVISTYGLAVWFGGKMIIEKGYTGGEVVTVIFAVLTGSMSLGQASPSLSAFAAGQAAAFKMFETIKRKPEIDSYDATGRQLDDIRGDIDLREVCFSYPTRPDEMIFNGFSLSIPSGTTAALVGQSGSGKSTVVSLIERFYDPQAGEVLIDGINLQEFQLKWIRQKIGLVSQEPVLFTCSIKENIAYGKDGATDEEIRAASELANAAKFIDKLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERIVQEALDRIMINRTTVIVAHRLSTIRNADTIAVIHQGKIVERGSHAELTKDPDGAYSQLIRLQEIKGSEKNVAYDKDKPESIVHSGRISSQRHSFLRSLSQGSSGVGNSGHHSFSASFGVPTSVGLLEPAGGGLEAPPSTDSLPPPPEVPLSRLAYLNKPEIPVLLIGTIAAVIHGVIMPTFGLLLSKMITIFYEPADKLRKDSKVWSLVFVALGVVSLLIFPCRFYFFGVAGGKLIKRIRKMCFEKVVHMEVSWFDEAEHSSGALGARLSTDAASVRSLVGDALGLLVQNSATAIAGLVIAFEASWQLAFIILALVPLLGLNGYVQFKFLKGFSADAKKLYEEASQVANDAVGSIRTVASFCAEQKVMELYQEKCEGPIKTGIRRGIISGIGFGFSFFTLYAVYACSFYAGARLVEDGKSTFSDVFRVFFALSMAAIGVSQSGSLVPDSTKAKSAAASIFAILDRKSQIDPSDDSGMTLEAVKGEIELKHVSFKYPTRPDVQIFRDLCLTIHSGKTVALVGESGSGKSTVISLLQRFYDPDSGHITLDGKEIKMLQVKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIIAAAELANAHKFISSLQKGYDTIVGERGVQLSGGQKQRVAIARAIVKNPKILLLDEATSALDAESEKVVQDALDRVMVDRTTIVVAHRLSTIKGADLIAVVKNGVIAEKGKHEALLNKGGNYASLVALHTSASSS 1285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1276g00020 1285 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 58 344 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi1276g00020 1285 CDD ABC_MTABC3_MDL1_MDL2 1041 1276 - -
Gabi1276g00020 1285 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1041 1278 IPR003439 GO:0005524
Gabi1276g00020 1285 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1030 1278 IPR027417 -
Gabi1276g00020 1285 FunFam ABC transporter B family member 9 1008 1030 - -
Gabi1276g00020 1285 SUPERFAMILY ABC transporter transmembrane region 37 363 IPR036640 GO:0005524|GO:0016020
Gabi1276g00020 1285 Gene3D ABC transporter type 1, transmembrane domain 102 1015 IPR036640 GO:0005524|GO:0016020
Gabi1276g00020 1285 Pfam ABC transporter 1061 1209 IPR003439 GO:0005524
Gabi1276g00020 1285 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 372 617 IPR027417 -
Gabi1276g00020 1285 FunFam ABC transporter B family member 9 43 375 - -
Gabi1276g00020 1285 Gene3D - 1031 1284 IPR027417 -
Gabi1276g00020 1285 Pfam ABC transporter transmembrane region 58 330 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi1276g00020 1285 Pfam ABC transporter transmembrane region 719 989 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi1276g00020 1285 FunFam ABC transporter B family member 1 369 618 - -
Gabi1276g00020 1285 CDD ABC_6TM_Pgp_ABCB1_D1_like 56 340 - -
Gabi1276g00020 1285 FunFam ABC transporter B family member 1 699 1007 - -
Gabi1276g00020 1285 PANTHER ABC TRANSPORTER B FAMILY 21 620 IPR039421 -
Gabi1276g00020 1285 Gene3D - 377 641 IPR027417 -
Gabi1276g00020 1285 FunFam ABC transporter B family member 1 1031 1280 - -
Gabi1276g00020 1285 CDD ABC_6TM_Pgp_ABCB1_D2_like 709 1024 - -
Gabi1276g00020 1285 SMART AAA_5 1068 1261 IPR003593 GO:0016887
Gabi1276g00020 1285 SMART AAA_5 406 592 IPR003593 GO:0016887
Gabi1276g00020 1285 Pfam ABC transporter 398 546 IPR003439 GO:0005524
Gabi1276g00020 1285 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 720 1006 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi1276g00020 1285 SUPERFAMILY ABC transporter transmembrane region 707 1025 IPR036640 GO:0005524|GO:0016020
Gabi1276g00020 1285 CDD ABC_MTABC3_MDL1_MDL2 379 617 - -
Gabi1276g00020 1285 ProSitePatterns ABC transporters family signature. 1181 1195 IPR017871 GO:0005524|GO:0016887
Gabi1276g00020 1285 ProSitePatterns ABC transporters family signature. 518 532 IPR017871 GO:0005524|GO:0016887
Gabi1276g00020 1285 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 379 615 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1276g00020 Gabi-Chr1276 191375 197450 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1276g00020 686 1285 Calmodulin-binding Proteins AT2G36910 39.187 7.15e-133 438
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1276g00020 K05658 - gmx:100800293 2074.29