Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1276g00019 ATGGCTGGTTCCAAGAAGAACAAGGTGAAGGACGAAAGCAAAAAAACAGTACCATTTTATAAGCTCTTCTCATTTGCAGACTCTTGGGATTATCTACTGATGTTTGTTGGGACAATAAGTGCTATTGGGAATGGAATTTCTTTGCCTTTAATGACTATAATTATTGGAGATGCAATTGATGCTTTTGGAGGAAATGTTAACACTAAACAAGTAGTTCATGAAGTGTCTCTGAAGTTTGCAATCACGGGTGCAGGTGCCTTTATTGCAGCCTTTTTGCAGGTGGCTTGCTGGGTGATCACCGGAGAAAGACAATCTGCAAGAATAAGAGGCTTATACCTCAAAGCAATTTTGAGGCAAGATGTCAGCTTCTTTGACAAGGAAACGAACAGTGGTGAGGTTGTTGGAAGGATGTCAGGTGATACAGTTCTAATTCAAGATGCCATGGGAGAGAAGGTAGGAAAATTCATACAGCATGTGGCATGTTTTTTAGGAGGTTTTGTCATAGCATTCATCAAGGGTTGGCTTCTATCCCTTGTCCTTCTATCTTCTCTTCCGCTTCTTGTCCTCTCCGGTTCCATTATGAGCTTTGCTTTTGCAAAGATGGCATCCCGTGGACAAGCAGCTTATTCTGAAGCAGCAACTATAGTAGAGCGGACAATTGGTTCAATTCGAACTGTTGCATCATTTACCGGAGAGAAGCAAGCTATAGCTCAATATAATCAATCCTTGACCAAAGCTTACATGGCTGGAGTGCAAGAGGGCTTGGCTGTTGGTTTAGGCCTTGGTTCATTTCGTTTAATTGCTTACAGCAGTTATGCTTTGGCTGTATGGTTTGGAGGGAAGATGGTACTAGAGAAAGGTTATACAGGAGGTGAAGTCATGAGTATATTTTTTGCAGTACTGACTGGCTCCATGTCTCTGGGGCAGGCAACTCCAAGCTTAACCGCATTTGCTGCGGGACAAGCTGCTTCTTTTAAAATGTTTGAAACAATAAAAAGGCAGCCAGATATTGATGCCTATGACACTGCTGGTAGGCAGTTTGATGATATTTCTGGAGATATAGAACTTAGGGAGGTTTGCTTTAGTTATCCTTCAAGACCAGATGAACTGATATTCAATGGATTTTCTCTTTCAATATTAAGTGGCAGTACTGTAGCTTTGGTTGGGCAAAGTGGGAGTGGGAAATCCACAATTGTTAGTTTGATAGAGAGGTTTTATGATCCACAGGCTGGTGAAGTTCTCATTGATGGTATCAACCTCAGAGAATTTCAACTGAAATGGATCAGACAGAAAATAGGCCTTGTCAGCCAGGAACCGGTTCTCTTTACTTGTAGCATTAAAGAGAATATTGGCTATGGTAAGGATGCGGCAACAGATGAAGAAATCAGAGCTGCAGCAGAACTTGCTAATGCTGTTAAATTCATAGATAAATTTCCCCATGGACTTGACACGATGGTTGGCGAGCATGGAACTCAACTTTCTGGGGGTCAAAAGCAAAGAATTGCTATAGCAAGGGCAATTCTGAAAGACCCAAGAATTCTCCTCCTTGATGAAGCTACAAGTGCCCTTGATGCAGAATCTGAAAGAGTTGTACAAGAGACACTAGACAGAATTATGACAAACCGAACAACTGTGGTTGTAGCCCACCGGCTAAGCACAATAAGGAATGCTGATATCATTGCCGTTATTCAGCAAGGAAAAGTAGTAGAAAAAGGTACACATGCTGAGCTCACTAAAGACCCTGATGGAGTTTTTAGCCAGCTCATTAGATTGCAAGAGATCAAAAGGGAATCAGAACAGCACGTTGCAAATGACTCAGGCAGGCTAGAAAACTTGGTAGATTCAGGAAGACAATCAAGCCAACAGTTTTCTTTCCCTCGGTCTTTAAGCCGGGACTCATCTGGATCTGGAAACAGCAGTCGCCAATCATTCAGAGTATCAAGTGCTGCTATGCCTACCACACTTGGTCTCTTGGAGACATCAGAGGGAGGTCCTGAAGTTCTTCCTTCAGCAGCATCCCATACACCTTCAGAAGTCCCATTTCTCCGCATTGCTTGTCTTAACAAGCCTGAAATCCCAGTGTTACTCATAGGGACTCTAGCAGCAGCGGTATCTGGGGCAATACTACCCATTCTGGGGCTTCTAGTCTCCAGCATGATAAATACTTTCTTTGAGCCTGCAGATGAACTCCGTAAAGACTCAAAGTTTTGGGCATTAATATTTTTTGTCCTTAGCGTGGCTGCCTTCTTATTTCATCCATTGAGGTCCTACTTTTTTGCTGTAGCTGGTTCTAAGTTGATAAAAAGGATCCGGCTAATGTGTTTTGAGAAAATAATTCACATGGAAGTAGGCTGGTTTGATCAAGCCGAGCATTCAAGTGGAGCACTCGGAGCAAGGTTGTCAACTGATGCTGCTTCAATTCGAGCTTTGGTTGGGGATGCACTTGGTTTGCTGGTTCAAGATATGGCTACAGCAATTACAGCCTTGGTAATTTCCTTTGAGGCAAACTGGCAGCTTTCTCTCATCGTTCTTGTTTTGCTACCTCTACTACTAGTTAATGGACATGTGCAAGTCAGGTCCATGCAAGGATTCAGCACAGATGCAAAGAAACTATATGAGGAAGCAAGTGAAGTAGCAAATGATGCAGTAGGGAATATCAGAACAGTTGCGGCTTTCTGTGCTGAAGAGAAGGTGATGGAATTATACCAGAAGAAATGTTTAGGACCAATCCAGACAGGTATAAGGCAAGGTTTAGTCAGCGGAACTGGTTTCGGGTTATCACTGTTCTTTCTGTTCTCTGTCTATGCGTGCAGTTTTTATGCCGGAGCCAGGCTTGTTAAGGATGGCAAATCATCAGTGTCAGATGTTTTCCGTGTCTTTTTTGTTCTCACAATGGCAGCTGTAGCAATATCTCAATCTGCCTTCACAGCCCCAGGCGTGAACAAAGCAAAAAGTTCTGCAGCTTCTATATTTGCCATTCTTGATCAGAAATCAAAAATAGATCCCAGTGATGAGTCCGGAATGACATTGCAAGATGTGAAGGGAGAGATTGAGTTCCACCATGTCACTTTCAAGTATCCAACCAGGCCTAATGTTCACATATTCAGAGATCTTTCCTTGACAATTCATTCAGGAAAGACAGTTGCCCTAGTAGGAGAAAGTGGAAGTGGGAAGTCAACAGTGATCTCATTGTTGCAAAGATTTTATGATCCAGATTCAGGTCAGATTACACTGGATGGAACAAAAATCCAAAAGCTACAACTCAAATGGTTTAGGCAGCAGATGGGCCTGGTAAGCCAGGAGCCCGTGTTGTTTAATGACACAATCCGAGCCAATATTGCATATGGAAAGGGTGGTGATGCAACTGAAGCTGAAATTATAGCTTCAGCAGAACTGGCAAATGCCCACAAGTTCATTAGCAGTTTGCAGCAGGGCTATGATACAGTTGTAGGGGAGAGAGGGATTCAACTATCTGGAGGTCAGAAACAGCGAGTGGCAATAGCAAGAGCAATAGTGAAGAGTCCAATGATTTTACTACTAGATGAAGCCACAAGTGCACTTGATGCTGAGTCTGAAAAAGTGGTTCAAGATGCACTTGACCATGTAAGGGTGGACAGAACCACAATTGTGGTGGCCCACAGGTTATCCACCATAAAGGGTGCAGATTTAATAGCTGTGGTTAAAAATGGAGTCATTGCAGAGAAAGGAAAGCATGACACTCTGCTCAATAAGGGTGGTACATATGCTTCCTTAATAGCACTGCACACAAGTGCTTCTTAA 3780 0.4291 MAGSKKNKVKDESKKTVPFYKLFSFADSWDYLLMFVGTISAIGNGISLPLMTIIIGDAIDAFGGNVNTKQVVHEVSLKFAITGAGAFIAAFLQVACWVITGERQSARIRGLYLKAILRQDVSFFDKETNSGEVVGRMSGDTVLIQDAMGEKVGKFIQHVACFLGGFVIAFIKGWLLSLVLLSSLPLLVLSGSIMSFAFAKMASRGQAAYSEAATIVERTIGSIRTVASFTGEKQAIAQYNQSLTKAYMAGVQEGLAVGLGLGSFRLIAYSSYALAVWFGGKMVLEKGYTGGEVMSIFFAVLTGSMSLGQATPSLTAFAAGQAASFKMFETIKRQPDIDAYDTAGRQFDDISGDIELREVCFSYPSRPDELIFNGFSLSILSGSTVALVGQSGSGKSTIVSLIERFYDPQAGEVLIDGINLREFQLKWIRQKIGLVSQEPVLFTCSIKENIGYGKDAATDEEIRAAAELANAVKFIDKFPHGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQETLDRIMTNRTTVVVAHRLSTIRNADIIAVIQQGKVVEKGTHAELTKDPDGVFSQLIRLQEIKRESEQHVANDSGRLENLVDSGRQSSQQFSFPRSLSRDSSGSGNSSRQSFRVSSAAMPTTLGLLETSEGGPEVLPSAASHTPSEVPFLRIACLNKPEIPVLLIGTLAAAVSGAILPILGLLVSSMINTFFEPADELRKDSKFWALIFFVLSVAAFLFHPLRSYFFAVAGSKLIKRIRLMCFEKIIHMEVGWFDQAEHSSGALGARLSTDAASIRALVGDALGLLVQDMATAITALVISFEANWQLSLIVLVLLPLLLVNGHVQVRSMQGFSTDAKKLYEEASEVANDAVGNIRTVAAFCAEEKVMELYQKKCLGPIQTGIRQGLVSGTGFGLSLFFLFSVYACSFYAGARLVKDGKSSVSDVFRVFFVLTMAAVAISQSAFTAPGVNKAKSSAASIFAILDQKSKIDPSDESGMTLQDVKGEIEFHHVTFKYPTRPNVHIFRDLSLTIHSGKTVALVGESGSGKSTVISLLQRFYDPDSGQITLDGTKIQKLQLKWFRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIIASAELANAHKFISSLQQGYDTVVGERGIQLSGGQKQRVAIARAIVKSPMILLLDEATSALDAESEKVVQDALDHVRVDRTTIVVAHRLSTIKGADLIAVVKNGVIAEKGKHDTLLNKGGTYASLIALHTSAS 1259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1276g00019 1259 SMART AAA_5 381 573 IPR003593 GO:0016887
Gabi1276g00019 1259 SMART AAA_5 1044 1237 IPR003593 GO:0016887
Gabi1276g00019 1259 CDD ABC_6TM_Pgp_ABCB1_D2_like 687 1000 - -
Gabi1276g00019 1259 FunFam ABC transporter B family member 1 675 980 - -
Gabi1276g00019 1259 FunFam ABC transporter B family member 1 1007 1256 - -
Gabi1276g00019 1259 CDD ABC_MTABC3_MDL1_MDL2 1017 1252 - -
Gabi1276g00019 1259 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 696 982 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi1276g00019 1259 FunFam Uncharacterized protein 981 1007 - -
Gabi1276g00019 1259 Gene3D ABC transporter type 1, transmembrane domain 21 601 IPR036640 GO:0005524|GO:0016020
Gabi1276g00019 1259 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 347 592 IPR027417 -
Gabi1276g00019 1259 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1006 1253 IPR027417 -
Gabi1276g00019 1259 SUPERFAMILY ABC transporter transmembrane region 15 338 IPR036640 GO:0005524|GO:0016020
Gabi1276g00019 1259 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 35 319 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi1276g00019 1259 FunFam ABC transporter B family member 1 344 593 - -
Gabi1276g00019 1259 Gene3D ABC transporter type 1, transmembrane domain 677 983 IPR036640 GO:0005524|GO:0016020
Gabi1276g00019 1259 Gene3D ABC transporter type 1, transmembrane domain 984 1006 IPR036640 GO:0005524|GO:0016020
Gabi1276g00019 1259 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1017 1254 IPR003439 GO:0005524
Gabi1276g00019 1259 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 354 590 IPR003439 GO:0005524
Gabi1276g00019 1259 Pfam ABC transporter 373 521 IPR003439 GO:0005524
Gabi1276g00019 1259 ProSitePatterns ABC transporters family signature. 493 507 IPR017871 GO:0005524|GO:0016887
Gabi1276g00019 1259 Pfam ABC transporter 1036 1185 IPR003439 GO:0005524
Gabi1276g00019 1259 SUPERFAMILY ABC transporter transmembrane region 687 1001 IPR036640 GO:0005524|GO:0016020
Gabi1276g00019 1259 CDD ABC_MTABC3_MDL1_MDL2 354 592 - -
Gabi1276g00019 1259 MobiDBLite consensus disorder prediction 599 647 - -
Gabi1276g00019 1259 Pfam ABC transporter transmembrane region 34 305 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi1276g00019 1259 Pfam ABC transporter transmembrane region 695 967 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi1276g00019 1259 MobiDBLite consensus disorder prediction 611 647 - -
Gabi1276g00019 1259 CDD ABC_6TM_Pgp_ABCB1_D1_like 34 327 - -
Gabi1276g00019 1259 Gene3D - 1007 1256 IPR027417 -
Gabi1276g00019 1259 Gene3D - 344 593 IPR027417 -
Gabi1276g00019 1259 PANTHER ABC TRANSPORTER B FAMILY 4 596 IPR039421 -
Gabi1276g00019 1259 FunFam ABC transporter B family member 9 21 350 - -
Gabi1276g00019 1259 ProSitePatterns ABC transporters family signature. 1157 1171 IPR017871 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1276g00019 Gabi-Chr1276 180863 186371 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1276g00019 9 1255 Calmodulin-binding Proteins AT2G36910 43.889 0.0 1038
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1276g00019 K05658 - gmx:100777713 2000.71