Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1276g00018 ATGGTGGCCGAAGCCAGCTTGGATGGAGATATTACTTCAACTGAGATGACAGGATCAACAAGTCATCCACCAGTTCTTGGTCCTGAAAATACCCAAGAAATGGCTGGTTCCAAGAAGAACAAGGTGAAGGACGAAAGCAAAAAAACAGTACCATTTTATAAGCTCTTCTCATTTGCAGACTCTTGGGATTATCTACTGATGTTTGTTGGGACAATAAGTGCTATTGGGAATGGAATTTCTTTGCCTTTAATGACTATAATTATTGGAGATGCAATTGATGCTTTTGGAGGAAATGTTAACACTAAACAAGTAGTTCATGAAGTTTCCAAGGTGTCTCTGAAGTTTGCAATCACGGGTGCAGGTGCCTTTATTGCAGCCTTTTTGCAGGTGGCTTGCTGGGTGATCACCGGAGAAAGACAATCTGCAAGAATAAGAGGCTTATACCTCAAAGCAATTTTGAGGCAAGATGTCAGCTTCTTTGACAAGGAAACGAACAGTGGTGAGGTTGTTGGAAGGATGTCAGGTGATACAGTTCTAATTCAAGATGCCATGGGAGAGAAGGTAGGAAAATTCATACAGCATGTGGCATGTTTTTTAGGAGGTTTTGTCATAGCATTCATCAAGGGTTGGCTTCTATCCCTTGTCCTTCTATCTTCTCTTCCGCTTCTTGTCCTCTCCGGTTCCATTATGAGCTTTGCTTTTGCAAAGATGGCATCCCGTGGACAAGCAGCTTATTCTGAAGCAGCAACTATAGTAGAGCGGACAATTGGTTCAATTCGAACTGTTGCATCATTTACCGGAGAGAAGCAAGCTATAGCTCAATATAATCAATCCTTGACCAAAGCTTACATGGCTGGAGTGCAAGAGGGCTTGGCTGTTGGTTTAGGCCTTGGTTCATTTCGTTTAATTGCTTACAGCAGTTATGCTTTGGCTGTATGGTTTGGAGGGAAGATGGTACTAGAGAAAGGTTATACAGGAGGTGAAGTCATGAGTATATTTTTTGCAGTACTGACTGGCTCCATGTCTCTGGGGCAGGCAACTCCAAGCTTAACCGCATTTGCTGCGGGACAAGCTGCTTCTTTTAAAATGTTTGAAACAATAAAAAGGCAGCCAGATATTGATGCCTATGACACTGCTGGTAGGCAGTTTGATGATATTTCTGGAGATATAGAACTTAGGGAGGTTTGCTTTAGTTATCCTTCAAGACCAGATGAACTGATATTCAATGGATTTTCTCTTTCAATATTAAGTGGCAGTACTGTAGCTTTGGTTGGGCAAAGTGGGAGTGGGAAATCCACAATTGTTAGTTTGATAGAGAGGTTTTATGATCCACAGGCTGGTGAAGTTCTCATTGATGGTATCAACCTCAGAGAATTTCAACTGAAATGGATCAGACAGAAAATAGGCCTTGTCAGCCAGGAACCGGTTCTCTTTACTTGTAGCATTAAAGAGAATATTGGCTATGGTAAGGATGCGGCAACAGATGAAGAAATCAGAGCTGCAGCAGAACTTGCTAATGCTGTTAAATTCATAGATAAATTTCCCCATGGACTTGACACGATGGTTGGCGAGCATGGAACTCAACTTTCTGGGGGTCAAAAGCAAAGAATTGCTATAGCAAGGGCAATTCTGAAAGACCCAAGAATTCTCCTCCTTGATGAAGCTACAAGTGCCCTTGATGCAGAATCTGAAAGAGTTGTACAAGAGACACTAGACAGAATTATGACAAACCGAACAACTGTGGTTGTAGCCCACCGGCTAAGCACAATAAGGAATGCTGATATCATTGCCGTTATTCAGCAAGGAAAAGTAGTAGAAAAAGGTACACATGCTGAGCTCACTAAAGACCCTGATGGAGTTTTTAGCCAGCTCATTAGATTGCAAGAGATCAAAAGGGAATCAGAACAGCACGTTGCAAATGACTCAGGCAGGCTAGAAAACTTGGTAGATTCAGGAAGACAATCAAGCCAACAGTTTTCTTTCCCTCGGTCTTTAAGCCGGGACTCATCTGGATCTGGAAACAGCAGTCGCCAATCATTCAGAGTATCAAGTGCTGCTATGCCTACCACACTTGGTCTCTTGGAGACATCAGAGGGAGGTCCTGAAGTTCTTCCTTCAGCAGCATCCCATACACCTTCAGAAGTCCCATTTCTCCGCATTGCTTGTCTTAACAAGCCTGAAATCCCAGTGTTACTCATAGGGACTCTAGCAGCAGCGGTATCTGGGGCAATACTACCCATTCTGGGGCTTCTAGTCTCCAGCATGATAAATACTTTCTTTGAGCCTGCAGATGAACTCCGTAAAGACTCAAAGTTTTGGGCATTAATATTTTTTGTCCTTAGCGTGGCTGCCTTCTTATTTCATCCATTGAGGTCCTACTTTTTTGCTGTAGCTGGTTCTAAGTTGATAAAAAGGATCCGGCTAATGTGTTTTGAGAAAATAATTCACATGGAAGTAGGCTGGTTTGATCAAGCCGAGCATTCAAGTGGAGCACTCGGAGCAAGGTTGTCAACTGATGCTGCTTCAATTCGAGCTTTGGTTGGGGATGCACTTGGTTTGCTGGTTCAAGATATGGCTACAGCAATTACAGCCTTGGTAATTTCCTTTGAGGCAAACTGGCAGCTTTCTCTCATCGTTCTTGTTTTGCTACCTCTACTACTAGTTAATGGACATGTGCAAGTCAGGTCCATGCAAGGATTCAGCACAGATGCAAAGAAACTATATGAGGAAGCAAGTGAAGTAGCAAATGATGCAGTAGGGAATATCAGAACAGTTGCGGCTTTCTGTGCTGAAGAGAAGGTGATGGAATTATACCAGAAGAAATGTTTAGGACCAATCCAGACAGGTATAAGGCAAGGTTTAGTCAGCGGAACTGGTTTCGGGTTATCACTGTTCTTTCTGTTCTCTGTCTATGCGTGCAGTTTTTATGCCGGAGCCAGGCTTGTTAAGGATGGCAAATCATCAGTGTCAGATGTTTTCCGTGTCTTTTTTGTTCTCACAATGGCAGCTGTAGCAATATCTCAATCTGCCTTCACAGCCCCAGGCGTGAACAAAGCAAAAAGTTCTGCAGCTTCTATATTTGCCATTCTTGATCAGAAATCAAAAATAGATCCCAGTGATGAGTCCGGAATGACATTGCAAGATGTGAAGGGAGAGATTGAGTTCCACCATGTCACTTTCAAGTATCCAACCAGGCCTAATGTTCACATATTCAGAGATCTTTCCTTGACAATTCATTCAGGAAAGACAGTTGCCCTAGTAGGAGAAAGTGGAAGTGGGAAGTCAACAGTGATCTCATTGTTGCAAAGATTTTATGATCCAGATTCAGGTCAGATTACACTGGATGGAACAAAAATCCAAAAGCTACAACTCAAATGGTTTAGGCAGCAGATGGGCCTGGTAAGCCAGGAGCCCGTGTTGTTTAATGACACAATCCGAGCCAATATTGCATATGGAAAGGGTGGTGATGCAACTGAAGCTGAAATTATAGCTTCAGCAGAACTGGCAAATGCCCACAAGTTCATTAGCAGTTTGCAGCAGGGCTATGATACAGTTGTAGGGGAGAGAGGGATTCAACTATCTGGAGGTCAGAAACAGCGAGTGGCAATAGCAAGAGCAATAGTGAAGAGTCCAATGATTTTACTACTAGATGAAGCCACAAGTGCACTTGATGCTGAGTCTGAAAAAGTGGTTCAAGATGCACTTGACCATGTAAGGGTGGACAGAACCACAATTGTGGTGGCCCACAGGTTATCCACCATAAAGGGTGCAGATTTAATAGCTGTGGTTAAAAATGGAGTCATTGCAGAGAAAGGAAAGCATGACACTCTGCTCAATAAGGGTGGTACATATGCTTCCTTAATAGCACTGCACACAAGTGCTTCTTAA 3888 0.4298 MVAEASLDGDITSTEMTGSTSHPPVLGPENTQEMAGSKKNKVKDESKKTVPFYKLFSFADSWDYLLMFVGTISAIGNGISLPLMTIIIGDAIDAFGGNVNTKQVVHEVSKVSLKFAITGAGAFIAAFLQVACWVITGERQSARIRGLYLKAILRQDVSFFDKETNSGEVVGRMSGDTVLIQDAMGEKVGKFIQHVACFLGGFVIAFIKGWLLSLVLLSSLPLLVLSGSIMSFAFAKMASRGQAAYSEAATIVERTIGSIRTVASFTGEKQAIAQYNQSLTKAYMAGVQEGLAVGLGLGSFRLIAYSSYALAVWFGGKMVLEKGYTGGEVMSIFFAVLTGSMSLGQATPSLTAFAAGQAASFKMFETIKRQPDIDAYDTAGRQFDDISGDIELREVCFSYPSRPDELIFNGFSLSILSGSTVALVGQSGSGKSTIVSLIERFYDPQAGEVLIDGINLREFQLKWIRQKIGLVSQEPVLFTCSIKENIGYGKDAATDEEIRAAAELANAVKFIDKFPHGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQETLDRIMTNRTTVVVAHRLSTIRNADIIAVIQQGKVVEKGTHAELTKDPDGVFSQLIRLQEIKRESEQHVANDSGRLENLVDSGRQSSQQFSFPRSLSRDSSGSGNSSRQSFRVSSAAMPTTLGLLETSEGGPEVLPSAASHTPSEVPFLRIACLNKPEIPVLLIGTLAAAVSGAILPILGLLVSSMINTFFEPADELRKDSKFWALIFFVLSVAAFLFHPLRSYFFAVAGSKLIKRIRLMCFEKIIHMEVGWFDQAEHSSGALGARLSTDAASIRALVGDALGLLVQDMATAITALVISFEANWQLSLIVLVLLPLLLVNGHVQVRSMQGFSTDAKKLYEEASEVANDAVGNIRTVAAFCAEEKVMELYQKKCLGPIQTGIRQGLVSGTGFGLSLFFLFSVYACSFYAGARLVKDGKSSVSDVFRVFFVLTMAAVAISQSAFTAPGVNKAKSSAASIFAILDQKSKIDPSDESGMTLQDVKGEIEFHHVTFKYPTRPNVHIFRDLSLTIHSGKTVALVGESGSGKSTVISLLQRFYDPDSGQITLDGTKIQKLQLKWFRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIIASAELANAHKFISSLQQGYDTVVGERGIQLSGGQKQRVAIARAIVKSPMILLLDEATSALDAESEKVVQDALDHVRVDRTTIVVAHRLSTIKGADLIAVVKNGVIAEKGKHDTLLNKGGTYASLIALHTSAS 1295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1276g00018 1295 Gene3D - 1043 1294 IPR027417 -
Gabi1276g00018 1295 MobiDBLite consensus disorder prediction 10 27 - -
Gabi1276g00018 1295 Pfam ABC transporter 409 557 IPR003439 GO:0005524
Gabi1276g00018 1295 FunFam ABC transporter B family member 1 380 629 - -
Gabi1276g00018 1295 ProSitePatterns ABC transporters family signature. 529 543 IPR017871 GO:0005524|GO:0016887
Gabi1276g00018 1295 FunFam ABC transporter B family member 1 711 1016 - -
Gabi1276g00018 1295 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 390 626 IPR003439 GO:0005524
Gabi1276g00018 1295 MobiDBLite consensus disorder prediction 635 683 - -
Gabi1276g00018 1295 MobiDBLite consensus disorder prediction 647 683 - -
Gabi1276g00018 1295 SMART AAA_5 1080 1273 IPR003593 GO:0016887
Gabi1276g00018 1295 SMART AAA_5 417 609 IPR003593 GO:0016887
Gabi1276g00018 1295 CDD ABC_MTABC3_MDL1_MDL2 390 628 - -
Gabi1276g00018 1295 SUPERFAMILY ABC transporter transmembrane region 723 1037 IPR036640 GO:0005524|GO:0016020
Gabi1276g00018 1295 ProSitePatterns ABC transporters family signature. 1193 1207 IPR017871 GO:0005524|GO:0016887
Gabi1276g00018 1295 Pfam ABC transporter 1072 1221 IPR003439 GO:0005524
Gabi1276g00018 1295 SUPERFAMILY ABC transporter transmembrane region 48 374 IPR036640 GO:0005524|GO:0016020
Gabi1276g00018 1295 FunFam ABC transporter B family member 9 54 386 - -
Gabi1276g00018 1295 MobiDBLite consensus disorder prediction 1 42 - -
Gabi1276g00018 1295 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1042 1289 IPR027417 -
Gabi1276g00018 1295 CDD ABC_MTABC3_MDL1_MDL2 1053 1288 - -
Gabi1276g00018 1295 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 68 355 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi1276g00018 1295 PANTHER ABC TRANSPORTER B FAMILY 31 632 IPR039421 -
Gabi1276g00018 1295 FunFam ABC transporter B family member 1 1043 1292 - -
Gabi1276g00018 1295 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 732 1018 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi1276g00018 1295 CDD ABC_6TM_Pgp_ABCB1_D1_like 67 363 - -
Gabi1276g00018 1295 FunFam Uncharacterized protein 1017 1043 - -
Gabi1276g00018 1295 Pfam ABC transporter transmembrane region 67 341 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi1276g00018 1295 Pfam ABC transporter transmembrane region 731 1003 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi1276g00018 1295 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1053 1290 IPR003439 GO:0005524
Gabi1276g00018 1295 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 383 628 IPR027417 -
Gabi1276g00018 1295 CDD ABC_6TM_Pgp_ABCB1_D2_like 723 1036 - -
Gabi1276g00018 1295 Gene3D ABC transporter type 1, transmembrane domain 114 963 IPR036640 GO:0005524|GO:0016020
Gabi1276g00018 1295 Gene3D - 388 641 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1276g00018 Gabi-Chr1276 180863 186829 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1276g00018 37 629 Calmodulin-binding Proteins AT2G36910 37.186 1.15e-113 385
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1276g00018 K05658 - gmx:100777713 2048.48