Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1276g00014 ATGGCTTCCTCAAAACACTCTTCCGCCTCCTCATCTGCCCCAAATTCTCAGTCCTCTGGAGACAACTTAGGTTTGCAGATCACCAATCACCGGTTGAACGGTAAGAATTTTCTGCAATGGTTTCAATCGGTTAAGTTGGTCATCCGGGCAAAGGGTAAGATGGGCTATCTTGAGGGAAAAATTAAGAAACCTACTGAGAATTCTCCTGATTATGACGATTGGGAGATTAATAATTCCTTGGTCATGGCTTGGCTGACTAATTCCATGGAACCACAGATTGGCCAAACCTATCTGTTCTTTGATACTGCCAAGGAAATTTGGGATGCTGTTCAACAAAATTACTCTGATCTGGAGAATACCTCTCAAGTTTTTGAACTGAGAAATAAGTTGAGAGACTTTCGTCAAAGGGGTATGACTGTTACTGAATATTTTACTGCACTAACGAATTTATGGCAGGAATTGGATCTTTATTATGCATCTGATCTTAAGGGATTGGAAGCTAATACCCAATTTAGAAAACACTTGGAGAAGAAAAGACTGTATGATTTCCTTGCCGGACTCAACCGAGATCTTGATGAGGTTCGTGGTCGAATATTGGGGCAGCGACCGTTACCTTCACTTGCTGACGCCTTTGCTGAAGTTCGTCGAGAAGCCAGTAGACGGAGAGTTATGCTGGGAGAAAAGGAGTCGCTTGATAAGTCTGATGATATGTCTGCATTAGCTGCCAACCGTACCATTGACCGTTCCTCCGGAGAATCAAAACGGGATGGTCGTCCATTGTGCACCCACTGCAATAAAATTGGTCATACCCGTGAGAAATGTTGGGAAATCCACGGGAAACCTGCAAATTGGAAGCCCAAAGGACAAAATAAAGGTCGTGCATATCAGGTCTCTACTGATGACAAGGTTGATGAGCCTCATGCATCCTCTGACTCTGATGGTGTCTTTCTTAGCAAGACTCAGTTTGAACAACTTCAGAGACTTTTGACTCAACCTCCTAAGGCCATTGCTGTAGCTGCATGCATTCCGGACTCATGGCCTGTTCTCATCCTTGCACCATCTTCGTTACGCTTGCAGTGGGCTTCAATGATTCAACAATGGCTGAATATTCCTTCATCAGATATTCTTATTGTCTTATCTCAAAGTGGTGGATCAAACCGAGGAGGTTTCAATATAGTATCTTCAAGTGCCAAAAGCAGCATTCACCTGGATGGACTATTCAACATCATCTCATATGATTTGGTGCCAAAGCTACAGAATATGCTTATAGCATCCAACTTTAAGGTTGTGATTGCAGATGAATCACATTTTCTGAAAAATGCTCAGGCAAAGAGGACAACTGCTTCTCTTCCAGTTATAAAGAAAGCTAAATATGCAATATTGCTTAGTGGAACTCCTGCTTTGTCCCGACCTATTGAACTATTCAAGCAGCTGGAAGCTTTGTATCCTGATGTATTTAGGAATGTACATGAATATGGTAACCGGTATTGCAAGGGTGGAATTTTCGGAGCTTATCAAGGTGCAAGTAACCATGAAGAATTGCACAATTTGATGAAGGCAACGGTGATGATTCGCAGACTTAAAAAGGATGTTCTTTCTGAACTTCCTGTAAAGCGTAGGCAACAAGTCTTCCTAGAATTGGCTGACAAGGACATGAAGCAAATTAATGCTTTATTTCGTGAGTTGGAGATGGTAAAAGCCAAAATTAAGGCATCTAATTCAAAAGAGGAGGCTGAATCACTCAAATTTACTCAAAAGAATCTTATTAACAAGATATATACTGATTCTGCAGAAGCCAAGATTCCATCTGTTCTTGATTATGTTGGAACTGTCATTGAGGCAGGTTGCAAGTTTCTTATATTCGCACATCATCAGCCAATGATAGATTCGATACATGAGTTTCTTCTTAAGAAAAAAGTGGGTTGCATCCGGATTGATGGAAGTACACCCGCTGCCTCAAGGCAACAATTGGTTACAGAGTTTCAGGAAAAAGATGCTATTAAGGCAGCAGTGCTATCTATTAAAGCTGGAGGAGTTGGGTTAACTCTAACTGCTGCCAGCACAGTCATCTTTGCAGAATTATCTTGGACCCCAGGTGACCTAATTCAGGCTGAAGACCGTGTTCATAGAATTGGCCAGGTGTCTTCAGTAAATATATACTACTTGCTGGCAAATGACACAGTTGATGACATCATATGGGACGTAGTGCAAAGCAAACTGGAGAATTTGGGGCAGATGTTAGATGGCCATGAGAACACCTTAGATGTCTCTGCTAGTCTGCCAAGGAATAGCCCTGCAAAGCAGAGAACTCTTGACCAGTTTGTTAGAAGATGTGATAACATGGATGGGTCGGAACAACAGTCCAACCCCAAACGTCCTCGGAAATGA 2388 0.4213 MASSKHSSASSSAPNSQSSGDNLGLQITNHRLNGKNFLQWFQSVKLVIRAKGKMGYLEGKIKKPTENSPDYDDWEINNSLVMAWLTNSMEPQIGQTYLFFDTAKEIWDAVQQNYSDLENTSQVFELRNKLRDFRQRGMTVTEYFTALTNLWQELDLYYASDLKGLEANTQFRKHLEKKRLYDFLAGLNRDLDEVRGRILGQRPLPSLADAFAEVRREASRRRVMLGEKESLDKSDDMSALAANRTIDRSSGESKRDGRPLCTHCNKIGHTREKCWEIHGKPANWKPKGQNKGRAYQVSTDDKVDEPHASSDSDGVFLSKTQFEQLQRLLTQPPKAIAVAACIPDSWPVLILAPSSLRLQWASMIQQWLNIPSSDILIVLSQSGGSNRGGFNIVSSSAKSSIHLDGLFNIISYDLVPKLQNMLIASNFKVVIADESHFLKNAQAKRTTASLPVIKKAKYAILLSGTPALSRPIELFKQLEALYPDVFRNVHEYGNRYCKGGIFGAYQGASNHEELHNLMKATVMIRRLKKDVLSELPVKRRQQVFLELADKDMKQINALFRELEMVKAKIKASNSKEEAESLKFTQKNLINKIYTDSAEAKIPSVLDYVGTVIEAGCKFLIFAHHQPMIDSIHEFLLKKKVGCIRIDGSTPAASRQQLVTEFQEKDAIKAAVLSIKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRVHRIGQVSSVNIYYLLANDTVDDIIWDVVQSKLENLGQMLDGHENTLDVSASLPRNSPAKQRTLDQFVRRCDNMDGSEQQSNPKRPRK 795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1276g00014 795 Pfam Helicase conserved C-terminal domain 613 712 IPR001650 -
Gabi1276g00014 795 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 337 537 IPR027417 -
Gabi1276g00014 795 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 315 484 IPR014001 -
Gabi1276g00014 795 Pfam Retrotransposon gag protein 83 188 IPR005162 -
Gabi1276g00014 795 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 425 754 IPR027417 -
Gabi1276g00014 795 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 603 755 IPR001650 -
Gabi1276g00014 795 MobiDBLite consensus disorder prediction 1 24 - -
Gabi1276g00014 795 Pfam gag-polypeptide of LTR copia-type 21 65 IPR029472 -
Gabi1276g00014 795 Pfam SNF2-related domain 345 582 IPR000330 GO:0005524|GO:0140658
Gabi1276g00014 795 Gene3D - 562 788 IPR027417 -
Gabi1276g00014 795 CDD SF2_C_SNF 599 723 - -
Gabi1276g00014 795 Gene3D - 333 551 IPR038718 -
Gabi1276g00014 795 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 335 787 - -
Gabi1276g00014 795 SMART helicmild6 629 712 IPR001650 -
Gabi1276g00014 795 FunFam Chromatin remodeling factor18 328 550 - -
Gabi1276g00014 795 FunFam Chromatin remodeling factor18 561 791 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1276g00014 Gabi-Chr1276 154043 165348 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1276g00014 583 732 RAD5 or RAD16-like Gene Family AT1G05120 30.519 3.16e-17 84.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gabi1276g00014 SNF2_N 4.8e-20 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1276g00014 K14440 - gmx:100797654 843.573