Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1274g00003 ATGCCTATTCATATCACAGAGAGGTTACTCTCTTGGAAATCCTTGCTCCTGCAATCATTTTGGGCCTTGTTGGGCCGTGGACCATCTTCCAGACCGAGCCCATCCTCTCAGGTGATCTATAAATATGATGTGTTTATCAGTTTCAGAGGTCCTAACACTCGTAACAGTTTTGTTGATCATCTCTATGCTCATCTCACAAGAAAAGGTATTTTCACCTTCAAGGATGACAAAAGACTCGAGAAAGGAAAATCTATTTCATCACAGCTTCAACAAGCAATTAAAGATTCAAGGGTTTCTATTGTTGTCTTCTCAATAGACTATGCTGGCTCAGCATGGTGTTTGGATGAAATGGCTTCTATATATGATTGCCAAAGAGATTTGAATCAAACTGTTTTCTCAGTTTTCTATCATGTCGATCCATCTCATGTACGAAATCAGAATGGGGAATATGGGGAGGACTTTTATTCACATACTTGGAAACAAAACCGAGACAAGGTTGATCGATGGAAGACAGCTATGAGGAATTTGGCCAATTCAGCTGGTTGGCATGTCAGGCATCAGCCAGAGTTTGAAGTGATTGAAAATATTGTTCAGACAGTAATAAAAAGATTGGGTCATAAATTCTCTGGGCTTGCTGATGATCTTATTGGGATACAACCTCGTGTAACAACATTAGAAAGCCTTTTAAAATTAAAATCAAAGGAAGATGATTTTCGAGTTTTAGGAATTTGGGGGATGGGTGGAATAGGAAAGACAACTCTTGCTACGGTTTTGTACGACAGAATCTCTTATCTATTTGATGCTTGCTGTTTTATCGAGGACGTAAGCAAAATTTATAGAGATGGTGGTGCTATTGCTGTACAGAAACAAATTCTTCGTCAAACTCTAGATGAAAAAAATCTAGAGACATATAGTCCTTCTGAAATATCCGGAATTGTAAGATATAGGCTACACAACATAAAGATCCTTGTAGTTTTAGACAATGTTGATCAATTAGAGCAACTGCAGGACTTAGCTATATATCCTAAGTTGCTTTTTGCAGGAAGCAGAATAATCATAACTACTAGGGATAAGCATATTCTTAGAGTTTATGGAGCAGATAAAGTTCATGAGGTTCCACTATTGAATAATAATGATGCAAGTGAACTTTTTTGTAGAAAAGCCTTCAAAAGTGACGACAGAAGCAATAGTTGTGTGGACTTGATTCCTCAATGGAAAGATGCTTTGAATAGATTGGAGAAAAATCCAGATAATAAAATTATGGATGTGCTTCAAATAAGTATTGAGGGACTACAACATGAGGAGAAAGAAATATTTTTGCACATTGCTTGTTTCTTTAAAGGGGAGAGAGAAGATTATGTTAAGCGAATTCTAGATGCTTGTGGATTACACCCTTACATTGGAATTCAAAGTCTGGTTGAGAAATCACTCATAATGATTAGAAATGAAGAAATTCATATGCATGAAATGTTGCAAGAATTGGGGAAGAAAATTGTCCGGCACCAATGTCCCGAGATGCCTGGATGCTGGAATAGATTATGGCTTTTCAAGGATTTCTATCATGTCTTGAGCACAGAAACGGTAACAAATTTTAATGTTGAAGCTATAGTTCTAGATCAAAAAGAAGATGTCTCCAAATGCAAGGCTGAAGGAATATCAAAGATGAGAAACCTTCGACTGCTCATATTATATCAGAAGAATTTTTCGGGAAGACTAAATTTTCTGTCTAACAACCTACAATATTTTTTGTGGCACGGTTACCCTTTTGCTTCTTTGCCATCAAAATTTGAGCCTTATAATCTTGTTGAATTGAATATGCCTAATAGCAGCATCGAACGACTATGGGAAGGCCGGAAGGATCTCCCTTGTTTGAAAAGGATGGATTTGAGCAACTCTAAATATCTTATGGAAACTCCAATGTTTGAAGGGATCTTAGAAATTGAGCGGCTAGATCTTACTGGATGTACAAACCTTTGTCAAGTCCATCCATCAATTGGACTTCTCACAAAACTTGCTTTCTTGAGTTTGCAAAATTGTAGCAGTTTGGTCAACCTTGATTTTGGTAGTTTATCTGATTTATGTTCGCTTCGTGTTCTACACCTCTCTGGTTGCACAAGACTTGAAAATACACCAGACTTTACAGGGGCATCAAATGTTGAGTACCTTGATATTGATCAATGTACAAGTTTATCCACGGTTCATGAATCTGTTGGGGATCTTGCAAAGCTTAAATTCTTGACTTTGAAAGATTGCACAAGTCTTGTCAATATACCTAGTAGGATTAACACCATGAGATCTCTTATAACTCTAGATTTATATGGTTGCTGGGGCCTTATGGAATTGCCAATGGAAAAAACTTTCATTTTTTCTCCCACTTTGGAATCTTTGATCCATCTAGACTTAGCCTTTTGCAATCTACATGAAGTGCCTAAAGCTATTGGAGAGTTAAAGTATTTGGAAAGACTAGATCTACGAGGAAACAATATTGTTTCAGTACCTTATACTACCACTAGGCTTTACTGTTTAGCATATTTAAACTTGGCACATTGTCATCAGCTTCAATCTTTACCTAAGCTCCCATTAACAAGTGCTCCATCAGTTGGAAGGTATTTTAAAACGACATCCAGATCTCATGATCAAAGGTCAGGATTATATATTTTTGACTGTCCCAAGCTGGTTGATAATTTGTCTATTTCCCCAGATAAAGACATCTCCCTTCAATGGTTGTTAAGACTAATTAAGGAACCTCGTCACTTTCGGTGTGGCTTTGACATTGTTTTTCCTTGGGATTGGACAAAAGAATTTGTTGTTCCATCGTGGTTATATCAACGGTTTAAAGGGGGTTCAGTAATAAGGATAGTACACTTGGATGTGGATCACAACTGGGTTGGTTTCGTCTTTTGTGTAGCATTTGAGATAAACAATGGTCTTGTTGGTTCTCTAGATTCATCCTCTTTGCCACTTGTACATCCTTTTTATCTTTCTTTTGAAAATGAATACACTGAAGAACGTTTTGATATGCCACTTAATTTGGAATTGGACAAGATTGATGGCTCAAAATATATTTGGACAATCTATATCTCTCGAAAGCACTGTCATTTTTTGAAAACAGGAGCGCATATCACATTCAAAGCTTGCCCTGGTTTGATGGTTATGGAATGGGGTTTACGCATGCTAATTGAGGAAGATGTAAGGGTGTTAAAAATTACCGAAAAACGTAGTTTTTCTTTCAGTACAGAACAACCTGGTCTTGTCATTGATAATGTTGAAGAAAGCAACAACACCCATCATCCTAAAATTCAACTTCCATACAATTGGTTGGTTACTGAGGAAGACGAAGAGGAGAAAATTGAAGCAAAGGAAAAAGAAAATAATCTCTCTAATCTAGGCTTCTGA 3396 0.3701 MPIHITERLLSWKSLLLQSFWALLGRGPSSRPSPSSQVIYKYDVFISFRGPNTRNSFVDHLYAHLTRKGIFTFKDDKRLEKGKSISSQLQQAIKDSRVSIVVFSIDYAGSAWCLDEMASIYDCQRDLNQTVFSVFYHVDPSHVRNQNGEYGEDFYSHTWKQNRDKVDRWKTAMRNLANSAGWHVRHQPEFEVIENIVQTVIKRLGHKFSGLADDLIGIQPRVTTLESLLKLKSKEDDFRVLGIWGMGGIGKTTLATVLYDRISYLFDACCFIEDVSKIYRDGGAIAVQKQILRQTLDEKNLETYSPSEISGIVRYRLHNIKILVVLDNVDQLEQLQDLAIYPKLLFAGSRIIITTRDKHILRVYGADKVHEVPLLNNNDASELFCRKAFKSDDRSNSCVDLIPQWKDALNRLEKNPDNKIMDVLQISIEGLQHEEKEIFLHIACFFKGEREDYVKRILDACGLHPYIGIQSLVEKSLIMIRNEEIHMHEMLQELGKKIVRHQCPEMPGCWNRLWLFKDFYHVLSTETVTNFNVEAIVLDQKEDVSKCKAEGISKMRNLRLLILYQKNFSGRLNFLSNNLQYFLWHGYPFASLPSKFEPYNLVELNMPNSSIERLWEGRKDLPCLKRMDLSNSKYLMETPMFEGILEIERLDLTGCTNLCQVHPSIGLLTKLAFLSLQNCSSLVNLDFGSLSDLCSLRVLHLSGCTRLENTPDFTGASNVEYLDIDQCTSLSTVHESVGDLAKLKFLTLKDCTSLVNIPSRINTMRSLITLDLYGCWGLMELPMEKTFIFSPTLESLIHLDLAFCNLHEVPKAIGELKYLERLDLRGNNIVSVPYTTTRLYCLAYLNLAHCHQLQSLPKLPLTSAPSVGRYFKTTSRSHDQRSGLYIFDCPKLVDNLSISPDKDISLQWLLRLIKEPRHFRCGFDIVFPWDWTKEFVVPSWLYQRFKGGSVIRIVHLDVDHNWVGFVFCVAFEINNGLVGSLDSSSLPLVHPFYLSFENEYTEERFDMPLNLELDKIDGSKYIWTIYISRKHCHFLKTGAHITFKACPGLMVMEWGLRMLIEEDVRVLKITEKRSFSFSTEQPGLVIDNVEESNNTHHPKIQLPYNWLVTEEDEEEKIEAKEKENNLSNLGF 1131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1274g00003 1131 SUPERFAMILY L domain-like 550 863 - -
Gabi1274g00003 1131 Gene3D Ribonuclease Inhibitor 521 686 IPR032675 -
Gabi1274g00003 1131 SUPERFAMILY "Winged helix" DNA-binding domain 418 523 IPR036390 -
Gabi1274g00003 1131 SUPERFAMILY Toll/Interleukin receptor TIR domain 33 182 IPR035897 -
Gabi1274g00003 1131 ProSiteProfiles TIR domain profile. 40 204 IPR000157 GO:0007165
Gabi1274g00003 1131 SMART till_3 41 179 IPR000157 GO:0007165
Gabi1274g00003 1131 Pfam Leucine Rich Repeat 600 617 IPR011713 -
Gabi1274g00003 1131 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 211 442 IPR027417 -
Gabi1274g00003 1131 Pfam NB-ARC domain 226 397 IPR002182 GO:0043531
Gabi1274g00003 1131 Pfam TIR domain 41 207 IPR000157 GO:0007165
Gabi1274g00003 1131 Gene3D - 39 209 IPR035897 -
Gabi1274g00003 1131 PRINTS Disease resistance protein signature 619 635 - -
Gabi1274g00003 1131 PRINTS Disease resistance protein signature 240 255 - -
Gabi1274g00003 1131 PRINTS Disease resistance protein signature 316 330 - -
Gabi1274g00003 1131 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 42 707 IPR044974 GO:0006952
Gabi1274g00003 1131 FunFam Disease resistance protein (TIR-NBS-LRR class) 39 206 - -
Gabi1274g00003 1131 Gene3D - 212 369 IPR027417 -
Gabi1274g00003 1131 Gene3D Ribonuclease Inhibitor 687 786 IPR032675 -
Gabi1274g00003 1131 Gene3D Ribonuclease Inhibitor 787 869 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1274g00003 Gabi-Chr1274 110502 117901 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1274g00003 32 830 WRKY Transcription Factor Family AT4G12020 30.760 5.28e-88 311
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1274g00003 - - var:108332841 1323.92