Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1274g00002 ATGGATAATCAATTCTCTTTGAATGCTGGGGTGTTCCATCCCCTCCACTTTGAACCTTCACCTTCACCTTCACCACCTTCTTCTATGCCCACATGGCATTCACTATCTGCATCAGCAATGGAAATTCAATCAACAGTTCTGAATTGCTCCCCTGAGCAAACCCATGATTGCTTTTACAACCCCACATGGGACAAGTCAATGGATCATGGTCTTCAGTTTGATTCTGCACTGAGTTCAATGGTTTCATCCCCTGCATCATCCAATCCCAACATGATGTCAAATGAGAATTTCATGATGAGGGAATTGATAGGGAAATTGGGAAATATTGGTAGCACTGATGAGATCTCACCACATTCTCAACCTTTGGTTATGCCATCTTCTTACATTAATGACAATAACAGCACCAACACTTCATGTTATAGCACCCCTTTGAGCTCTCCTCCAAAGCTCAACATTACCCCAGTGATGAACCACTTGGTGAAAGAGAATTTTCCCAGTTTGGGAGGAAAATCAATTGGTTTGAATACCAGTGTGGCTGAATTCTCAGCTGATCCTGGGTTTGTTGAAAGGGCTGCAAAGTTTTCTTGCTTTGGTAGCAGGAGTTTCAATGGCAGGAGTAGCCAATTGGTGATGAACAATGCTGAATTAGCTTTGAGATCTGCTCAAGTAATGGAAAGAGAGAAACTTTCTAGAGTCTCAAGTAGCCCATCACTCAAAACATTTGGATCTCAAATGGGTGCACAGGAGAACAAGAATTCTCCATTGCAGGATCAGGAGAGAATGGAAGTAGCTAATTCTCAAGAGGAATCTACAATATCTGAGCAAACCCCAAACGGGGAAACAGGAATGAAAACTTGTCATGATATGAATTCCAGGAAAAGAAAAGCTTCTTCCAAAGGAAAAGCCAAAGAAACTTCAAACTCTACCAATCCAACCAAGGGTGTTAAAGGTGCTGAAGACTCAAATGCAAAGCGCAGCAAGTCAAATGAAAATGGCCAAGTGAAGGTTGAGGAAGAGTCCAAAGAAGGTACTTCTAATGATGCAGGGGAAGAGAAACAGAACAATAGTAACTCCAAACCTCCTGAGCCTCCAAAAGATTACATTCATGTGAGAGCAAGAAGGGGTCAAGCTACTGATAGCCATAGTCTTGCAGAACGTGTAAGGAGGGAGAAAATCAGTGAGAGGATGAAGCTTCTACAAGATCTTGTACCAGGTTGCAACAAGGTCACTGGTAAGGCACTTATGCTTGATGAAATTATAAACTATGTTCAGTCATTGCAGCGTCAAGTTGAGTTTCTGTCTATGAAATTGGCTAATGTTAACCCAAGGATGGATCTTAGTGTTGAGAATCTTGTATCAAAGGATATATTTCAATCAAATAATTCTTTGGCACATCCAATGTTCCCATTAGATTCCTCAACACCAGCCTTTTATGGGCACCAGCCCCAGCAAAACTCAGCTATCCACAATAACATTCCTAATGGAACTGTGACCCACTCTTTAGTGGACCCATTAGACACTTCTTTGTGCCAAAATTTTGGCATGCAGTTACCTTCCCTTAATGGGTTTAATGAAAGTGGCTCTCAGTATCCATTAACATTCTGTGAGGATGACCTGCATACCATTGTTCAGATGGGGTTTGGCCAGACTACAAACAGGAAAACACCATCACAGTCCCCAAGTTTCAACGGTTCAAATCAAGCACCCCAAATGAAAGTTGAGCTTTGA 1728 0.4184 MDNQFSLNAGVFHPLHFEPSPSPSPPSSMPTWHSLSASAMEIQSTVLNCSPEQTHDCFYNPTWDKSMDHGLQFDSALSSMVSSPASSNPNMMSNENFMMRELIGKLGNIGSTDEISPHSQPLVMPSSYINDNNSTNTSCYSTPLSSPPKLNITPVMNHLVKENFPSLGGKSIGLNTSVAEFSADPGFVERAAKFSCFGSRSFNGRSSQLVMNNAELALRSAQVMEREKLSRVSSSPSLKTFGSQMGAQENKNSPLQDQERMEVANSQEESTISEQTPNGETGMKTCHDMNSRKRKASSKGKAKETSNSTNPTKGVKGAEDSNAKRSKSNENGQVKVEEESKEGTSNDAGEEKQNNSNSKPPEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLANVNPRMDLSVENLVSKDIFQSNNSLAHPMFPLDSSTPAFYGHQPQQNSAIHNNIPNGTVTHSLVDPLDTSLCQNFGMQLPSLNGFNESGSQYPLTFCEDDLHTIVQMGFGQTTNRKTPSQSPSFNGSNQAPQMKVEL 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1274g00002 575 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 249 489 IPR024097 GO:0006355
Gabi1274g00002 575 FunFam Basic helix-loop-helix transcription factor 373 445 - -
Gabi1274g00002 575 MobiDBLite consensus disorder prediction 227 367 - -
Gabi1274g00002 575 MobiDBLite consensus disorder prediction 318 348 - -
Gabi1274g00002 575 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 376 426 IPR011598 GO:0046983
Gabi1274g00002 575 Pfam Helix-loop-helix DNA-binding domain 380 427 IPR011598 GO:0046983
Gabi1274g00002 575 SMART finulus 382 432 IPR011598 GO:0046983
Gabi1274g00002 575 MobiDBLite consensus disorder prediction 227 285 - -
Gabi1274g00002 575 Gene3D - 373 447 IPR036638 GO:0046983
Gabi1274g00002 575 MobiDBLite consensus disorder prediction 302 316 - -
Gabi1274g00002 575 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 374 445 IPR036638 GO:0046983
Gabi1274g00002 575 MobiDBLite consensus disorder prediction 549 575 - -
Gabi1274g00002 575 CDD bHLH_AtBPE_like 366 451 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1274g00002 Gabi-Chr1274 55029 57622 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1274g00002 1 529 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G07340 42.351 6.03e-106 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi1274g00002 HLH 4.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1274g00002 - - gmx:100801233 777.704