Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1260g00020 ATGGCGAGGCTTGACAGGATGGGCAGAAATAAAAGCCTAGAGAGTCTAATGGATTCAGAAAAACCAGGAAACGCAAGAAATGTGAAGCAACTGAGGCCCCAGAAGTCCATTCCTGGCCATGGCCTTGAATTCAGTAACCTCTCGTATAGTATCATAAAGAAGCAGAAAAAGGATGGAGTTTGGACCAAGAAAGAAGCATATCTTCTTCATGATCTCTCTGGTCAGGCAGTAAAAGGTGAAATTATGGCAATCATGGGGCCTAGTGGTGCTGGCAAATCCACCTTCCTTGATGCCTTGGCCGGGCGAATTGCGAAAGGGAGTCTAGAAGGATCAGTTAGAATTGATGGAAAACCAGTATCTACAAGCTACATGAAGATGGTATCATCATACGTGATGCAAGATGACCAGCTCTTCCCTATGTTGACAGTTTTTGAAACATTTATGTTTGCAGCTGAAGTTAGGCTTCCGCCTTCCATTTCTGGGGAGGAAAAGAAGAAGAGGGTTTATGAACTCCTTGATAAACTGGGCTTACAGAGTACTACGCATACCTATATTGGTGATGAGGGAACGAGAGGAGTTTCAGGAGGGGAACGACGAAGGGTATCTATTGGCATAGACATCATTCATAAGCCTTCACTTCTGTTTCTTGATGAACCTACCTCAGGCCTTGATTCTACAAGTGCTCTTAGTGTAGTGGAAAAGGTTAAAGACATAGCTCAAGGTGGTAGCATTGTCCTTATGACCATACATCAGCCTTCATATAGAATTCAAATGCTCCTGGACAAGATCACCATCCTTGCAAGGGGAAGACTGATATACATGGGAAAGCCAGATGCACTTCAGGCTCACCTTTCTGGATTTGGAAGGCCAGTACCTGAAGGAGAAAACAGTATTGAGTATCTCCTGGATGTGATAAATGAATATGATCAAGCAACGGTTGGGCTTGACCCCCTTGTCCAATACCAACATGATGGCCTCAAACCTGACCCAGCAGCCATGACACCTGTTCCAAAAGCTCAAACACCTTACAGAAGGAACAGCCCTGCATCCAAACACATGATTAGCCTACGCAGCCAAGGATTTACTGCTGGAACCCCACAGCCAGATTCTGCACAATTTGGTTATCAAGATGAGGAAGATGATGATGATGCTGAGAATTTTGATAGCTCCATTGGAAGGAGAAGTGTTCATACACCAAGGAATAATATGACTACTGGTGTTTACCCACGTTTGGCTTCTCAGTTCTACCAAGATTTCTCAGCCAAAGATTTCTCTGTGTGGCTTTATCATGGTGTTGTAGGAACCCCCCGTCGCCAACCATCATGGACTCCAGCAAGAACTCCAGGATTGACACCTGGAAAAACACCCATCATGTCAGGACCAAGAAGTGCTGTTTCCAACCAATATTCTGCAGCTTATCAGGAACCTTATCGCCCCAAAACGCCTGCAGTGGGTAGCCAGTCTCTGGACTATTCTGCAACTTCATATGCAACTTCATATGAAGAGTTTCAGATTGAGGAAGTGCTTGATGAGCCAAACCATGGATCCAAGTATGCAAATCCATGGTTGCGTGAGGTTGCGGTGCTATCGTGGCGAACAGCACTCAATGTAATTCGCACCCCAGAACTCTTCCTCTCCCGTCAGATTGTGTTAACTGTTATGGCAATTGTCCTGTCCTCCATTTTCAAAAATCTAAGTCAAACTTCTTTCCAAGACATCAATAGGCTCCTCAATTTCTACATCTTTGCAGTGTGCCTTGTTTTCTTTTCTTCCAATGATGCAGTCCCATCTTTTATAATGGAGAGGTTCATCTTCATCAGGGAGACTTCCCACAATGCTTACCGTGCTTCTTCATATGTCATCTCTTCCCTCATTGTTTACCTCCCATTTTTTGCAGTTCAAGGCCTCACATTTGCTGTCATAACCAAATTATGGCTCCACTTGAAAAGCAGTCTCTTTAATTTCTGGCTAATACTTTATGCCTCGCTTATAACTACCAATGCATATGTAATGCTTGTTAGTGCTCTTGTGCCTAGTAACATTACAGGCTATGCAGTAGTCATAGCCACAACAGCACTCTTCTTTTTGACCTGTGGTTTCTTCCTCAAAAGAACTCAGATACCCATTTACTGGAGGTGGCTCCACTATATTTCTGCAATCAAATACCCATTTGAGGCATTGCTCACAAATGAATTCAAGAACCACCGTGGCTGCTACACAGGAAACAAAGCAGATTTATCCCCCGGACCATTAGGAACCGTGAAGCCCAGCAAACAACATAGTCCCAATCTGCCTCCTGACTGCTTATTAGGAGCAGATGTCTTGTCCACAATGGATATTACAATGGAAAACATATGGTATGACATCATAATACTGCTAGCTTGGGGTGTTCTTTACAGGTTCTTCTTCTATTTGGTTTTGAGATTTTACTCCAAGAATGAGAGAAAGTGA 2451 0.437 MARLDRMGRNKSLESLMDSEKPGNARNVKQLRPQKSIPGHGLEFSNLSYSIIKKQKKDGVWTKKEAYLLHDLSGQAVKGEIMAIMGPSGAGKSTFLDALAGRIAKGSLEGSVRIDGKPVSTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISGEEKKKRVYELLDKLGLQSTTHTYIGDEGTRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSALSVVEKVKDIAQGGSIVLMTIHQPSYRIQMLLDKITILARGRLIYMGKPDALQAHLSGFGRPVPEGENSIEYLLDVINEYDQATVGLDPLVQYQHDGLKPDPAAMTPVPKAQTPYRRNSPASKHMISLRSQGFTAGTPQPDSAQFGYQDEEDDDDAENFDSSIGRRSVHTPRNNMTTGVYPRLASQFYQDFSAKDFSVWLYHGVVGTPRRQPSWTPARTPGLTPGKTPIMSGPRSAVSNQYSAAYQEPYRPKTPAVGSQSLDYSATSYATSYEEFQIEEVLDEPNHGSKYANPWLREVAVLSWRTALNVIRTPELFLSRQIVLTVMAIVLSSIFKNLSQTSFQDINRLLNFYIFAVCLVFFSSNDAVPSFIMERFIFIRETSHNAYRASSYVISSLIVYLPFFAVQGLTFAVITKLWLHLKSSLFNFWLILYASLITTNAYVMLVSALVPSNITGYAVVIATTALFFLTCGFFLKRTQIPIYWRWLHYISAIKYPFEALLTNEFKNHRGCYTGNKADLSPGPLGTVKPSKQHSPNLPPDCLLGADVLSTMDITMENIWYDIIILLAWGVLYRFFFYLVLRFYSKNERK 816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1260g00020 816 ProSitePatterns ABC transporters family signature. 193 207 IPR017871 GO:0005524|GO:0016887
Gabi1260g00020 816 Pfam ABC-2 type transporter 526 732 IPR013525 GO:0016020|GO:0140359
Gabi1260g00020 816 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 64 284 IPR027417 -
Gabi1260g00020 816 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 28 803 - -
Gabi1260g00020 816 SMART AAA_5 78 278 IPR003593 GO:0016887
Gabi1260g00020 816 MobiDBLite consensus disorder prediction 1 39 - -
Gabi1260g00020 816 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 42 293 IPR003439 GO:0005524
Gabi1260g00020 816 MobiDBLite consensus disorder prediction 438 463 - -
Gabi1260g00020 816 Pfam ABC transporter 69 221 IPR003439 GO:0005524
Gabi1260g00020 816 CDD ABCG_EPDR 42 275 - -
Gabi1260g00020 816 Gene3D - 41 287 IPR027417 -
Gabi1260g00020 816 MobiDBLite consensus disorder prediction 328 400 - -
Gabi1260g00020 816 MobiDBLite consensus disorder prediction 1 16 - -
Gabi1260g00020 816 MobiDBLite consensus disorder prediction 340 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1260g00020 Gabi-Chr1260 124219 127434 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1260g00020 62 362 Calmodulin-binding Proteins AT2G36910 22.830 4.62e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1260g00020 K05681 - gmx:100819497 1332.39