Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1260g00011 ATGTCTTCTCTCTTGGATGAGTCCAGGGAGCACTTGCTGGAGGTGGATGGCTACGCCAATGGAAATGGAGGGGAACAGGAACATACCAAACCCAAATTCCAGATACGAAATCTGACCAGAGTCTCCGACGATGGAGTTCACATACTCAAAGGCATCAACGTCGATATCCCTAAGGGTGTCATCGTGGGGATCATAGGCCCCAGTGGTAGCGGCAAGTCAACGCTCTTGAGGGCCTTAAACCGCCTCTGGGAGCCACCCTCCGCCTCCGTCTTCCTCGACGGCGCTGATATCTGCGATCTCGACGTTCTCTCCCTCCGCCGTAAGGTTGGCATGCTCTTTCAGCTCCCCGCCCTCTTTGAAGGCACAGTTGCAGACAATGTGAGGTATGGACCACAACTAAAAGGGAAAAAGCTAACCGATGATGAGGTGCGCAAGTTGCTGATAATGGCGGACATAGATGCTTCTTTCCTGGAAAAGTCTGGTGCTGAGCTCTCTGTGGGTCAAGCTCAAAGAGTTGCACTTGCCAGGACTTTAGCTAATTCACCAGAGGTTTTGCTGCTGGATGAGCCAACTAGTGCGTTAGATCCAATATCCACAGAAAACATAGAGAATGCCCTGATGAAGCTGAACAAGACTCGGGGCATGACAGTGATCATGGTCTCTCATAGCATCAAACAAATCCAGAGGATAGCTGACATAGTGTGCCTGCTCGTTGATGGTGAAATTGTTGAAGTTCTTAGGCCTGATAAACTCTCTGAAGCCAAGCATCCCATGGCACAAAGGTTTATTGAACTCAGTTCTTAG 804 0.4988 MSSLLDESREHLLEVDGYANGNGGEQEHTKPKFQIRNLTRVSDDGVHILKGINVDIPKGVIVGIIGPSGSGKSTLLRALNRLWEPPSASVFLDGADICDLDVLSLRRKVGMLFQLPALFEGTVADNVRYGPQLKGKKLTDDEVRKLLIMADIDASFLEKSGAELSVGQAQRVALARTLANSPEVLLLDEPTSALDPISTENIENALMKLNKTRGMTVIMVSHSIKQIQRIADIVCLLVDGEIVEVLRPDKLSEAKHPMAQRFIELSS 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1260g00011 267 ProSitePatterns ABC transporters family signature. 164 178 IPR017871 GO:0005524|GO:0016887
Gabi1260g00011 267 FunFam ABC transporter, ATP-binding protein 30 262 - -
Gabi1260g00011 267 Pfam ABC transporter 49 192 IPR003439 GO:0005524
Gabi1260g00011 267 CDD ABC_PstB_phosphate_transporter 33 251 IPR005670 GO:0005315|GO:0016020|GO:0035435
Gabi1260g00011 267 Gene3D - 31 266 IPR027417 -
Gabi1260g00011 267 PANTHER ABC TRANSPORTER I FAMILY MEMBER 17 1 266 IPR005670 GO:0005315|GO:0016020|GO:0035435
Gabi1260g00011 267 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 33 264 IPR003439 GO:0005524
Gabi1260g00011 267 SMART AAA_5 58 249 IPR003593 GO:0016887
Gabi1260g00011 267 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 33 254 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1260g00011 Gabi-Chr1260 80996 82740 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1260g00011 46 251 Calmodulin-binding Proteins AT2G36910 33.180 1.66e-29 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1260g00011 K02068 - gmx:100791365 400.593