Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1260g00003 ATGGAAGACCTCATTGGCCTTCTAAGGATTCGGATCAAGCGTGGCGTCAACCTCGCCGTTCGTGATGTCAATAGCAGCGATCCATACGTCGTCATTAAGATGGCCAACCAGAAACTCAAGACTCGCGTGATTAAAAAGGATATTAATCCTGAGTGGAATGAAGACCTTACACTTTCCGTCACAGATGCTGTTCGTACATTCAAATTGACAGTGTATGACCACGACACTTTTACAAAAGATGATAAAATGGGAGATGCAGAATTTGACCTGACACCGTATATAGAAGCCTTGAGGATGAACCTAGAAAACCTCCCCAGCGGTACTATAATCGCAAGAATACAACCAAGCAGGCAAAACTGCCTCGCCGAGGAGAGCTACATCACTTACACCAATGGCAAAGTTATTCAAGAGTTTGTCCTTCGATTGCGAAATGTCGAAACTGGTGAAGTTGAGATCCAATTGCAATGGATTGATCTTCCTGGTTCCAAGGGTTTATGA 498 0.4398 MEDLIGLLRIRIKRGVNLAVRDVNSSDPYVVIKMANQKLKTRVIKKDINPEWNEDLTLSVTDAVRTFKLTVYDHDTFTKDDKMGDAEFDLTPYIEALRMNLENLPSGTIIARIQPSRQNCLAEESYITYTNGKVIQEFVLRLRNVETGEVEIQLQWIDLPGSKGL 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1260g00003 165 ProSiteProfiles C2 domain profile. 1 103 IPR000008 -
Gabi1260g00003 165 CDD C2_ArfGAP 5 148 - -
Gabi1260g00003 165 Pfam C2 domain 6 92 IPR000008 -
Gabi1260g00003 165 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 4 163 IPR044562 -
Gabi1260g00003 165 Gene3D C2 domain 2 163 IPR035892 -
Gabi1260g00003 165 SMART C2_3c 7 102 IPR000008 -
Gabi1260g00003 165 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 3 91 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1260g00003 Gabi-Chr1260 16704 19124 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1260g00003 38 165 C2H2 Transcription Factor Family AT1G70790 59.231 4.06e-53 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1260g00003 - - gmx:100799469 277.715