Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1258g00001 ATGAAGAGAGTAAGGGATGAGGCTCCTCCAAAGAAAACGGTTGAATTTGAAGAAGCTATTAGTTTTGTGAACAAGATAAAGAAACGATTCCAAAGTGATGAGCATGTTTACAAATCGTTCTTGAACATTTCCAATATGTACCGCAAAGAGCATAAGGACATGGGTGAAATTTATAGTGAGGTTGCTACCCTGTTTAAGGATCATCGAGATTTGCTTGAGGAGTTCACTAGATTCTTACCAGATAGTTTCGCAGCACCTTCTACACAGCATGCTCCGGATGCTCGAAATTCATTGCAGCGCTTTAGTGAGCGGAGTTCTATGGCACCCATGATGCGGCAAATGCAAGTATATCGACGAAAGAGGCTTCCTTCTCATGATCGTGAGCGTGATCTGAGTGTTGAACACCCTGAGATGGATGATGACAACACAATGATGAACATGCACAAGAAGCGGAGGAAACGTGAGAGTAAGGATAGGAGGATTAATCGTGATCAGGATGAGAGAGAACCTGATAATAATAACAGCAGGGATTTGAACTTGCAGCGCTTTCATGAGAAAAAGAAATCTGTCAAGAAGGCTGAAGGTTTTGGGTTGGCTTCAGACTTTTCTTCTAAGGAAGACAAGGATACCTTAAAGAACATGTATAGTCAAGCATTCAGTTTCTTTGAGAAAGTTAAGGAGAAGTTGAACAGTGCTGATGACTACCAAGCTTTCTTGAAGTGCCTTCATAATTTTTTCGTCAGTGAAATAATAAAAAGGAATGAATTGCAAAATTTGGTAACCGATTTACTTGGAAAGCATCTTGATCTTATGGTGGAATTCAATGATTTCCTGGAGTGTTTGGAAAATATTGATGGGTTCCTTGCTGGTGTCATGAGTAAAAAGTCACTAAGATCATCAAAGTTGGAGGACAAAGACAAAGACAAAGACAAAGAGCAGAAGCGTGAGATGGATGGAGCTAAAGAGAAGGAAAGATACAGGGAGAAGGAGTACATGGGAAAATCCATTCAAGAACTTGACCTCAGTGACTGTAAACGTTGCACTCCCAGCTACCGGCTTCTACCTGCTGATTATCCAATTCCTACAGCTAGTCAGAGATCTGAGCTTGGTGCTCAAGTATTGAATGATCACTGGGTATCTGTGAGTTCAGGAAGTGAGGATTACTCTTCCGAACATATGTGCAGGAATCAGTACGAAGAGAGCTTGTTCAGATGTGAAGATGACAGATTTGAGCTGGACATGTTATTAGAGTCTGTGAGTTCTGCAGCTAAACGTGCAGAGGAATTATATAATAACATGAATGAAAATAAGATCAATATGGAGACTCTGAACCGTATTGAAGATTACTTTACTGTTCAAAATTTAAGGTGCATTGAACGTCTATATGGTGACCATGGTCTTGACGTTATAGACATATTGCGTAAAAACCCAACTCGTGCGCTCCCTGTAATATTGACTCGACTGAAGCAGAAACAGGAGGAGTGGAGTCGGTGTCGTTCAGATTTCAATAAAGTTTGGGCTGAAATTTATTCTAAAAATCACTTAAAGTGA 1551 0.4036 MKRVRDEAPPKKTVEFEEAISFVNKIKKRFQSDEHVYKSFLNISNMYRKEHKDMGEIYSEVATLFKDHRDLLEEFTRFLPDSFAAPSTQHAPDARNSLQRFSERSSMAPMMRQMQVYRRKRLPSHDRERDLSVEHPEMDDDNTMMNMHKKRRKRESKDRRINRDQDEREPDNNNSRDLNLQRFHEKKKSVKKAEGFGLASDFSSKEDKDTLKNMYSQAFSFFEKVKEKLNSADDYQAFLKCLHNFFVSEIIKRNELQNLVTDLLGKHLDLMVEFNDFLECLENIDGFLAGVMSKKSLRSSKLEDKDKDKDKEQKREMDGAKEKERYREKEYMGKSIQELDLSDCKRCTPSYRLLPADYPIPTASQRSELGAQVLNDHWVSVSSGSEDYSSEHMCRNQYEESLFRCEDDRFELDMLLESVSSAAKRAEELYNNMNENKINMETLNRIEDYFTVQNLRCIERLYGDHGLDVIDILRKNPTRALPVILTRLKQKQEEWSRCRSDFNKVWAEIYSKNHLK 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1258g00001 516 ProSiteProfiles PAH domain profile. 211 281 IPR003822 GO:0006355
Gabi1258g00001 516 PANTHER SIN3B-RELATED 9 516 IPR039774 GO:0003714
Gabi1258g00001 516 Gene3D Paired amphipathic helix 209 282 IPR036600 GO:0006355
Gabi1258g00001 516 MobiDBLite consensus disorder prediction 119 148 - -
Gabi1258g00001 516 SUPERFAMILY PAH2 domain 212 279 IPR036600 GO:0006355
Gabi1258g00001 516 MobiDBLite consensus disorder prediction 158 185 - -
Gabi1258g00001 516 FunFam Paired amphipathic helix protein SIN3 208 283 - -
Gabi1258g00001 516 Pfam Sin3 family co-repressor 345 437 IPR013194 -
Gabi1258g00001 516 SMART hdac_interact2seq4b 343 443 IPR013194 -
Gabi1258g00001 516 FunFam Paired amphipathic helix SIN3-like protein 11 82 - -
Gabi1258g00001 516 Gene3D Paired amphipathic helix 11 82 IPR036600 GO:0006355
Gabi1258g00001 516 MobiDBLite consensus disorder prediction 89 109 - -
Gabi1258g00001 516 Pfam Paired amphipathic helix repeat 233 278 IPR003822 GO:0006355
Gabi1258g00001 516 Pfam Paired amphipathic helix repeat 35 79 IPR003822 GO:0006355
Gabi1258g00001 516 SUPERFAMILY PAH2 domain 9 81 IPR036600 GO:0006355
Gabi1258g00001 516 MobiDBLite consensus disorder prediction 299 326 - -
Gabi1258g00001 516 Coils Coil 416 446 - -
Gabi1258g00001 516 ProSiteProfiles PAH domain profile. 12 82 IPR003822 GO:0006355
Gabi1258g00001 516 MobiDBLite consensus disorder prediction 83 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1258g00001 Gabi-Chr1258 8809 12411 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gabi1258g00001 Sin3_corepress 6.1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1258g00001 K11644 - gmx:100807181 802.357