Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1257g00233 ATGGAAGGGGGATCGTGGAATTGTGTCAATGTAACACCGTTCCTGAGCAAGACCTACGACATGGTGGATGAACCGTCGACCAACTCGGTGGTGTCGTGGGGTGATAACAACAACACCTTTGTTGTTTGGAACGTTCCAGAATTCGCCAGAGACATCTTGCCTAAGCATTTCAAGCACAACAACTTCTCCAGCTTCGTCAGGCAGTTAAATACTTACGGTTTTAGAAAGGTTGACCCAGATCGATGGGAATTTGCAAATGAAGGATTTTTAAGGGATAAGAAACAACTCTTAAAGAGTATCTGTAGGCGGAAATCTACTCAAGGAAATGGTAGTCAACAATCCTCTCAAGCGCATAACTCAACTGTTGGGGCATGCGTTGAAGTGGGTAAGTTTGGGCTTGAGGAAGAGGTGGAACGACTGAAAAGGGATAAGAATGTTCTTATGCAAGAACTTGTTAGGTTAAGTCAGCAACAGCAAGGCACTGATAACCAAATGCAAAGTGTTGGGCAACGTGTGCAGGTAATGGAGCAGCGTCAGCAGCATATGATGTCATTCCTGGCAAAGGCCATGCAGAGTCCAGGCTTCTTTGCTCAATTTGTAGAGCAGCAAAATGAAAGTAATAGACACATTCCTGGAGGCAATAAAAAGAGGAGGTTCAATGGCCAGGAAGAAGATAGTTTAGCTACCAAGAATCTCCATAATTCTCTTGATGGTCGTGTTGTCAAGTACCAGACTTCCACAAATGAGGCTGCAAAGGCATTACTTCACCAGATATTGCAAATAAATAATTCTACAACAACGGAATCATCAATTAAGAACCCTGATGCATTCCTTATTGACGACATTCCTTCTCCCATTGCGTTAGATAGCAGTAGTTCAACTACTCAGGTTTCTAATGTGACCCTTTCCAATTGTATGCCCAATAGCATATCTGAGGTGCAGTCTCCACCTGCTGTGTTGACTGACTGTGGCAAAACTGCTGAATTTCCAGTGTTAAACGTGCATAATTGTCAAGACAATGTTCTAGATTTTTGTGAAGTTCAAGGGATGGAAACGGAAAGTAGTTCAGTGGATCTTGATCTTAATTTTGCGGGGGTTGACACTGGGAACATGGAGGAGATAGATATGATATCAGCTGTTCTGGATGAGACATACTCTGTAGAAGCTTATCATTTTTCGCCTGATGCTGATGAAATTTCTAAACTCCCAGGAATCAATGATGAATTCTGGGAACTGTATTTTAGGCCAAGTCCACTTACGGGAGACACAGAAGAAATTAAATGTAGCTCTCTAGGATGTGGCTTGACCGAAAACCAGGGTTTGCCGTCAGAAAAGGAAAATAAACAGGAAAAATTGGATAAGATACAGAATGTTAACCATCTTACCCAACTGATAGGACTTCTTGCATCCGAGTCTTAA 1419 0.4235 MEGGSWNCVNVTPFLSKTYDMVDEPSTNSVVSWGDNNNTFVVWNVPEFARDILPKHFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRDKKQLLKSICRRKSTQGNGSQQSSQAHNSTVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLSQQQQGTDNQMQSVGQRVQVMEQRQQHMMSFLAKAMQSPGFFAQFVEQQNESNRHIPGGNKKRRFNGQEEDSLATKNLHNSLDGRVVKYQTSTNEAAKALLHQILQINNSTTTESSIKNPDAFLIDDIPSPIALDSSSSTTQVSNVTLSNCMPNSISEVQSPPAVLTDCGKTAEFPVLNVHNCQDNVLDFCEVQGMETESSSVDLDLNFAGVDTGNMEEIDMISAVLDETYSVEAYHFSPDADEISKLPGINDEFWELYFRPSPLTGDTEEIKCSSLGCGLTENQGLPSEKENKQEKLDKIQNVNHLTQLIGLLASES 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1257g00233 472 Gene3D - 7 104 IPR036388 -
Gabi1257g00233 472 Pfam HSF-type DNA-binding 14 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi1257g00233 472 Coils Coil 130 157 - -
Gabi1257g00233 472 PRINTS Heat shock factor (HSF) domain signature 52 64 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi1257g00233 472 PRINTS Heat shock factor (HSF) domain signature 65 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi1257g00233 472 PRINTS Heat shock factor (HSF) domain signature 14 37 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi1257g00233 472 SMART hsfneu3 10 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi1257g00233 472 ProSitePatterns HSF-type DNA-binding domain signature. 53 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi1257g00233 472 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 10 298 IPR027725 -
Gabi1257g00233 472 SUPERFAMILY "Winged helix" DNA-binding domain 10 103 IPR036390 -
Gabi1257g00233 472 FunFam Heat shock transcription factor 1 7 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1257g00233 Gabi-Chr1257 2069676 2075660 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1257g00233 11 472 HSF AT5G16820 51.899 2.31e-146 425
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Gabi1257g00233 HSF_DNA-bind 3.3e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1257g00233 K09419 - gmx:100793665 647.121