Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1257g00227 ATGAGAACACCTAGTAATGATGAAAGTGGTTTGAAGAAAGGACCTTGGAGCCCAGAAGAGGACAAAATATTAGTGGATTACATTGAGAAACACGGCCATGGGAGTTGGAGAGCTCTTCCAAAGCTTGCAGGATTGAACAGGTGTGGAAAGAGTTGCAGGCTAAGGTGGACTAATTATCTGAGGCCTGATATCAAACGAGGAAAATTCTCTGATGAAGAAGAGCAACTTGTCATCAATTTGCATGCAGTTCTTGGAAATAAGTGGGCAGCTATAGCAGCTCATTTACCAGGGAGGACTGATAATGAAATTAAGAATTTATGGAACACACATTTAAAGAAGAAGCTTCTGCAAATGGGGTTAGACCCAATGACCCACCGTCCAAGATCAGATCACCTAAACCTTCTTAGCAATCTACAACAGATATTGGCTGCTGCAAACATTGTCAACAGTTTCACAACAAACCCTTGTGACATAAATGCTTTAAGGTTACACTATTACTCACTGCCAAACGGTTTGGTAAATGATGTTTTAGGATTGAGTCACTCTAACCTCCAAAACCTGCAGTATAATGGTTCAACAGGATTCTCTTCTCAAATTCAACCCAATTTCCAAAACTTTGAAGCCCCTCAGCAGCCAGAAGGAAGGTATCAACAGTTGAATGGAGGCAGAAATAGTAGTTGCAGGGAATCACAAAAGATTGATGAAAAACATGGTTCAACAAATGCTGCTCCCACGCCATCAAATTCGCTTCCAACACTGGTTTCAGCCTCACCTGAACGAGAAGAAAACATGGTAAACCCAAAGGAATGCTCTTACCCTTCTTCCTCCACCTTTGAAACGTGGGAAGATTTCATGGATGAGGAAGCAAGTGATGCTTATTGGAAAGATTTCATAGAGTAA 900 0.4133 MRTPSNDESGLKKGPWSPEEDKILVDYIEKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSDEEEQLVINLHAVLGNKWAAIAAHLPGRTDNEIKNLWNTHLKKKLLQMGLDPMTHRPRSDHLNLLSNLQQILAAANIVNSFTTNPCDINALRLHYYSLPNGLVNDVLGLSHSNLQNLQYNGSTGFSSQIQPNFQNFEAPQQPEGRYQQLNGGRNSSCRESQKIDEKHGSTNAAPTPSNSLPTLVSASPEREENMVNPKECSYPSSSTFETWEDFMDEEASDAYWKDFIE 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1257g00227 299 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Gabi1257g00227 299 Gene3D - 68 115 - -
Gabi1257g00227 299 CDD SANT 68 111 IPR001005 -
Gabi1257g00227 299 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Gabi1257g00227 299 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 2 251 - -
Gabi1257g00227 299 MobiDBLite consensus disorder prediction 237 256 - -
Gabi1257g00227 299 MobiDBLite consensus disorder prediction 213 227 - -
Gabi1257g00227 299 CDD SANT 15 60 IPR001005 -
Gabi1257g00227 299 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Gabi1257g00227 299 Pfam Myb-like DNA-binding domain 66 111 IPR001005 -
Gabi1257g00227 299 FunFam Transcription factor MYB39 68 129 - -
Gabi1257g00227 299 FunFam MYB-related transcription factor 12 65 - -
Gabi1257g00227 299 SMART sant 65 113 IPR001005 -
Gabi1257g00227 299 SMART sant 12 62 IPR001005 -
Gabi1257g00227 299 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Gabi1257g00227 299 Gene3D - 12 65 - -
Gabi1257g00227 299 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Gabi1257g00227 299 MobiDBLite consensus disorder prediction 213 275 - -
Gabi1257g00227 299 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1257g00227 Gabi-Chr1257 2018284 2019536 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1257g00227 2 299 MYB Transcription Factor Family AT5G16770 48.649 4.70e-91 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi1257g00227 Myb_DNA-binding 8.6e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1257g00227 K09422 - gmx:102660452 407.142