Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1257g00214 ATGAATATGAATAATAGTAACAATGGTTGGGTATTCACAATGTCTCAGTGGCAGGAACTGGAGCACCAAGCTTTGATTTACAAGTACATGGTGGCTGGTCTTCCTGTGCCACCTGATCTTGTTATTCCCATTCAGAACAGCTTCAACTCCATTTCCCAAACCTTGTTGCACCATCCCATTCCCACTATGAGTTATTGTTCCTTCTATGGGAAGAAGGTGGACCCAGAGCCAGGACGATGCAGGAGGACTGATGGGAAAAAGTGGAGGTGCTCCAAGGAAGCGTACCCAGACTCCAAGTACTGTGAACGACACATGCACCGTGGCCGCAACCGTTCAAGAAAGCCTGTGGAAGCACAAACTATGACACAGTCATCATCAATTGAGACATCACTTGCTGTAACTGGTGGCAGCAGTGGAACTGGGAATTTCCAGAACCTTACCACAAATGCCTTTGGTAATACCCAAGGTACTGGTTCTGAAACTGACCAAACCCACTATCATGTGGATTCCATCCCCTATGGGATCCCAAGTAAAGAATACAGGTATTTTCAAGGACCTAAATCTGTGGGAGGTGAACATAGTTTATCTTCCAAAACTTTAGGAAGCAACAAGGTTCTCCGGATGGAGTCACAGCTGGAAAACACTTCGATGCCTACCGGAGTTGCCTCGTTCTCTACGTCGAGATCAAACAATAATTCCATATTGCAGGGTCAGGGTGATTATCTCCAGCGTTCATTTTTATCCAGTGAATATGCCTCAGGAGAAACTGGGAAGCATGAGGGTCAGTCTCTTCGACCTTTCTTTGAAGAATGGCCTAATAGCAGGGAGTCATGGTCTGGTCTGGAAGATGAGAGATCCAACCAGACAGCATTCTCCACAACTCAACTCTCAATATCCATTCCTATGTCCTCATCAAACGTCTCTAAAACTAGCTCACAATCCCCACATGGTGAGTCTTAA 960 0.4573 MNMNNSNNGWVFTMSQWQELEHQALIYKYMVAGLPVPPDLVIPIQNSFNSISQTLLHHPIPTMSYCSFYGKKVDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVEAQTMTQSSSIETSLAVTGGSSGTGNFQNLTTNAFGNTQGTGSETDQTHYHVDSIPYGIPSKEYRYFQGPKSVGGEHSLSSKTLGSNKVLRMESQLENTSMPTGVASFSTSRSNNNSILQGQGDYLQRSFLSSEYASGETGKHEGQSLRPFFEEWPNSRESWSGLEDERSNQTAFSTTQLSISIPMSSSNVSKTSSQSPHGES 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1257g00214 319 SMART QLQ_2 10 46 IPR014978 GO:0005524|GO:0005634|GO:0006355
Gabi1257g00214 319 ProSiteProfiles QLQ domain profile. 11 46 IPR014978 GO:0005524|GO:0005634|GO:0006355
Gabi1257g00214 319 MobiDBLite consensus disorder prediction 275 319 - -
Gabi1257g00214 319 Pfam WRC 75 117 IPR014977 -
Gabi1257g00214 319 MobiDBLite consensus disorder prediction 115 166 - -
Gabi1257g00214 319 MobiDBLite consensus disorder prediction 106 170 - -
Gabi1257g00214 319 PANTHER GROWTH-REGULATING FACTOR 5 11 306 IPR031137 GO:0005634|GO:0006351|GO:0032502
Gabi1257g00214 319 Pfam QLQ 12 45 IPR014978 GO:0005524|GO:0005634|GO:0006355
Gabi1257g00214 319 MobiDBLite consensus disorder prediction 283 319 - -
Gabi1257g00214 319 ProSiteProfiles WRC domain profile. 74 118 IPR014977 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1257g00214 Gabi-Chr1257 1910357 1914029 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1257g00214 12 117 GRF Transcription Factor Family AT3G13960 63.889 3.90e-46 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Gabi1257g00214 WRC 1.7e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1257g00214 - - gmx:100797906 507.294