Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1257g00185 ATGGACACACCAGAGAGGAACCAGATCAACCCTCCCGTCTCTCAATTCGAGGATTCACCTGTGTTCAACTATATCAATAATTTATCTCCTATAAAGCCCGTTAAGTCTGTTCACATTACTCAGACTTTCAATTCACTTAGCTATTCATCCCCACCATCTGTTTTCACATCACCCCATGTTAGCTGTCTCAAGGAATCTAGATTCCAACGGAGACATAACCCATTGGGTACATCAAAGCCTAAGGTTTCATCTGAAGATGTAAATAAAGTTTACTCGAGTGATCAGGCTCTTGCAGATTCTACTCATGCACATCATTACTCAAGTGAATTACAGGAAAATACTGATCAAGGGATTTCCGTTGGAGATACTTCCATTGAGCTATCTAGTGAACACACAAAATTCTCAGTTGAGCTACCCCAAGCCTTAAAATATAATTGTGGTAACCCTGGCTATGATCCTCCACTTTGTGCTGATGAGGTTAACTCTCTTTTGGAATTGCCTGCTGAGGCAGCATCAGATGTTGCCCATGTTCAGGAAGGCTGTAAAACAGATTCAGTTGAGGATGGGGTACATGTTCGGGGAATATGTCAGGCTGAGCCAAAGAGTGAAGGCCCTGACTGTGATTGGGATAGTTTAATTCCCGATGCCACTGATCTTTTAATTTTTAATTCCCCAAATGAAGCAGAAGCTTTGAAGGGCCTACTGCAGAAACCGCGCAGCGATTTTATGTTTCTGCTACCACAATCCACCATCAATAATGGTCAGAAAATGCAAGTTGTTGATGCAGTTGCTTCTGGTTCTGAACATGAAATTGAAGATCATTGTTCTGAGCAAATAGCAGCCACAGATGCAGACCATACACAGGAAAATCTTGCCAATATTGCTCTGATGACGAGCAATCCTAATGAGAAAACAGATGATGAGCTTGTTTCTGTCATGCGTGGTGGTGGTGGTGGTGGTGGTACACTGAGACGCTGTTTAGACTTTGAGATGGCCCGTGTGCGAACGAAGAATACAGATGAGAATTCGAACACTGGTTCTAATGCATCGCAGTCTGATGAGAGGAATGCTACTAATGAAAAGCATCTGCTTCCTACAAAACGCAATGGGAATTCACAAAGGTGCATTTTGCCTGGAATTGGTTTACACTTGAACGCACTTGCAAACTTAAAAGATTACAAAGGCATGAATAATGAAAAATTGTCTTCTGGAAGACAACTCAGTCTACCCAGCTCCACTTCTTCCTTGCATCTCTCTATAAGCCAAGAACATCAGCATCTATCTTTGGTATCTGTATCATCTGAAAGAGACTTGGTTCCATCAGACAATGGGGTTCAGCCTGCTGAAGATTGTTCCCAGGGATCAGCTTACATGGCTGGTGAAGATTTCAATCAGAACAGCCCCAAAAAGAAAAGGCGTAAATCAGAAACTGGGGGCTGCAAACATTGTAATTGCAAGAAATCAAAATGTTTGAAGCTTTATTGTGAGTGCTTTGCTGCTGGTGTCTACTGCATAGAACCTTGCAATTGTCAGGATTGCTTCAACAAACCCATTAATGAAGATACTGTTGTTCAAACTCGCAAGCAGATTGAATCTCGTAACCCAATTGCATTTACTCCTAAAGTCATTGAAACCGAGGATGAACCAAATAAAACTCCAGCTTCAGCACGACACAAAAGAGGATGCAACTGCAAGAAATCAAGCTGCCTAAAGAAATATTGTGAATGTTATCAGGGGGGTGTTGGTTGCTCCATTAGCTGTAGATGTGAAGGGTGCAAGAATGCATATGGTAGAAAGGATGGTTCTGCTCCTATAGGAATAGAAGCTGAGCCAGAAGAAACAGAAGCATGTGACAAGGCTGTGGTGGAAAAAGCTTTACAGAAAACTGAAATTCAGAATATTGAACATCACCCACATTCTGTTCTTGAGGCAACACCGTTACGGATTTCCAGGCCCTTGCTTCTTTTGCCCTCTTCATCAAAAGGAAAGCCACCAAGATCTTTTGTTACAACCATCTCTGGTTCTTCTGGATTGTTTACCAATCAAAAGCATGGGAAATCCAATTCTGTTTGGTCTCCATCTAAGCATTTTCAAACTGTTCCAGATGATGAAATGCCAGATATTCTCCGAGGTGATAGCTCTCCTATCACTTGCATCAAAACTTCTTCTCCAAATGGCAAGAGAATCTCCTCTCCTAACTGTGACTTGGGATCATCTCCTAGTCGTAGAGGTGGCAGGAAGTTGATATTACAATCCATTCCTTCCTTTCCTTCTCTCACCCCTCATCATTAA 2292 0.421 MDTPERNQINPPVSQFEDSPVFNYINNLSPIKPVKSVHITQTFNSLSYSSPPSVFTSPHVSCLKESRFQRRHNPLGTSKPKVSSEDVNKVYSSDQALADSTHAHHYSSELQENTDQGISVGDTSIELSSEHTKFSVELPQALKYNCGNPGYDPPLCADEVNSLLELPAEAASDVAHVQEGCKTDSVEDGVHVRGICQAEPKSEGPDCDWDSLIPDATDLLIFNSPNEAEALKGLLQKPRSDFMFLLPQSTINNGQKMQVVDAVASGSEHEIEDHCSEQIAATDADHTQENLANIALMTSNPNEKTDDELVSVMRGGGGGGGTLRRCLDFEMARVRTKNTDENSNTGSNASQSDERNATNEKHLLPTKRNGNSQRCILPGIGLHLNALANLKDYKGMNNEKLSSGRQLSLPSSTSSLHLSISQEHQHLSLVSVSSERDLVPSDNGVQPAEDCSQGSAYMAGEDFNQNSPKKKRRKSETGGCKHCNCKKSKCLKLYCECFAAGVYCIEPCNCQDCFNKPINEDTVVQTRKQIESRNPIAFTPKVIETEDEPNKTPASARHKRGCNCKKSSCLKKYCECYQGGVGCSISCRCEGCKNAYGRKDGSAPIGIEAEPEETEACDKAVVEKALQKTEIQNIEHHPHSVLEATPLRISRPLLLLPSSSKGKPPRSFVTTISGSSGLFTNQKHGKSNSVWSPSKHFQTVPDDEMPDILRGDSSPITCIKTSSPNGKRISSPNCDLGSSPSRRGGRKLILQSIPSFPSLTPHH 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1257g00185 763 MobiDBLite consensus disorder prediction 334 372 - -
Gabi1257g00185 763 SMART CXC_2 478 519 IPR033467 -
Gabi1257g00185 763 SMART CXC_2 557 598 IPR033467 -
Gabi1257g00185 763 MobiDBLite consensus disorder prediction 67 86 - -
Gabi1257g00185 763 MobiDBLite consensus disorder prediction 459 478 - -
Gabi1257g00185 763 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 762 IPR044522 GO:0003700
Gabi1257g00185 763 ProSiteProfiles CRC domain profile. 479 597 IPR005172 -
Gabi1257g00185 763 MobiDBLite consensus disorder prediction 679 696 - -
Gabi1257g00185 763 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 560 595 IPR005172 -
Gabi1257g00185 763 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 481 516 IPR005172 -
Gabi1257g00185 763 MobiDBLite consensus disorder prediction 679 745 - -
Gabi1257g00185 763 MobiDBLite consensus disorder prediction 715 738 - -
Gabi1257g00185 763 MobiDBLite consensus disorder prediction 338 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1257g00185 Gabi-Chr1257 1724832 1730234 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1257g00185 16 763 CPP Transcription Factor Family AT4G14770 41.935 3.11e-143 434
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Gabi1257g00185 TCR 3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1257g00185 - - gmx:100804447 1149.81