Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1257g00161 ATGCCTCCTGGTAGGAGGCTTGGCCCCGAGACTATCCGAGTCTGTAATGGCTTGACTGCCTTTGAGCGGGGTATGGTAGGGGGTCCTGAAATTGGTAGGAAGAGGGATAGAATGGAAAAAATTAGGGGTGATGGGGAAGGTATGATTGCGGAGAATGGTTCGGAAAAGAGGGAAAAGAAACGTAATAAGTTGAATGTGTATGATTTCAATGAATACAAGGGTAAGGATGTGGAGAAGATGAGAAGGAGGCATTTTGATAATAATGGAGTTGGTTTTGGAGGAAGGTTTATTGGATCAATGCATGCCGGTAGAAGTGGCATCGATAGGGAATTAGAAATGGGGTCAAGCAGATACATTCTTGATAAGAGAAAGAACTCCTATCATGACAGGCCAAGTGGTTTGTATCCGGGGGATAATGTTGATCACAGTAGGTTCAAGATGAACAGGGATGGAGCTCAGCTGCCTCTGACCTTGTCAAGGGAGAAGTTTAATTCAGATGAGTCTATTAGGGTTCAGGGGAAAAATGGTGTTTTGAAGGTAATGGTTAATAAGAAGAAGGTGGATAGGCCATTAGAACACTATGATCAATGCAAACCTGTGGAAAACAGGCAAAGGTTGAAAACCGAAGGGACTGCCAAGAGGAATGTCCTGATTCATCCCCCCTCGTACTTGGAAGCAAAATGTGTTGAGAAACCAGAATTACTTGTTAGGCCAGAGAAGAAACAGATAACACCAAGAAAATCATTGTCAAGTAAGGACAGTAGGGGTGATGAGTGGGATTCAGATAACAGTGATACATCATTGAAACCAGGAATGAGAAATACTGAATCTCAGAAGCCTACGAAGAGGATAATGTCTGAGGATGAACAGACTCCTATGCATGAAAAGCTCCCAACTACAAAAGCAAAAGAAGGAAAAATTAAGCGTGGTAGTGGCACAGAAAAACAGAAACTGCGAGAAAAAATAAGGGAGATGCTGCTGAATGCAGGTTGGATCATAGACTATCGACCTCGAAGGAATAGAGACTATCTGGATGCAGTTTACATTAATTCAGCAGGTACGGCCTATTGGTCTATCATCAAGGCCTATGATGCACTTCAAAAGCAATTGAATGATGATGCCAACGAGGCCAAGGCCAAAGGGGACAGTTCTTCCTTTGCTCCTATTGCAGATGAGGTGCTTAGTCAGTTAACAAGGAAAACTAAGAAGAAAATGGAGAAAGAATTGAAGAAGAAGAAGAAGAAAAGATATGATAGTGAAAGTGATAGTGAAAGAGAGCCTCACATAAGAAGATCTGCCAGCAACAAGCATGATATGAATAGCATGGATAGTGATAGCAATGAGGAGAAATTAAGCTCCTTTATAAAGCAGGGAAGTAAGTCAATGAAAAATATAATGATTGAAAATACCGTTGCCAGTGCTAGCTCTAAAAGCCAGAATGCTACCCATCACTCAAACGATGGAATAGAAAAACCATTCTCTGGAAGTGATCCTCATCTTCTACATGGACGGAAGAGTAGAAAACATGGAAGATGTACCTTGTTAGTTCGTAGTTCTAACAAGGGATTAAATTCTGAATCTGATGGCTTTGTCCCATACACAGGCAAACGGACAGTGCTTTCCTGGTTGATTGACTCTGGGACAGTAGAATTAAGCCAAAAGGTTCAATACCGTAGACGGAAGAAAGTACTGCTGGAGGGATGGATCACAAGAGATGGCATTCACTGCGGCTGCTGTAGTAAGATCCTCACAGTTTCAAAGTTTGAGCTTCATGCAGGAAGCAAATTGCTGCGTCCATATCAAAATATATATTTGGAATCTGGAGTTTCTCTTCTACAGTGCCAGATAGATGCATGGAATAGACAACAGAACTACGAGAAAATCGGTTTCCATTCAGTGGATATTGATGGTGATGATCCAAATGATGATACTTGTGGTATTTGTGGAGATGGAGGGGATTTAATCTGTTGTGATGGTTGTCCATCAACATTTCATCAGAACTGTTTGGATATACAGATGCTTCCTCCTGGTGAATGGCGTTGTCCAAATTGTACCTGTAAGTTTTGTGGAATAGCCGGTGAAACTTCTAAAAAAGATGATGCAACTGTGTATGTCCTACATACTTGCAACTTATGCGAGAAAAAATATCATGACTCTTGCACTAAGGAGGTGGATGCCCTTCCTAATAGCTTCAATACATCAGGCCCTTCTTTTTGTGGGAAAGAGTGCAAAGAGCTTTTTGAGCAATTGAAGAAGTACCTTGGTACCAAGCATGAACTAGAAGCGGGCTTTTCATGGTCTCTTGTTCATAGAACAGATGAAGACTCAGAGGCAGCTAGTAGGGGAATTACCCAGAGGGTGGAATGCAATTCCAAGCTAGCTATTGCACTGACTGTGATGGACGAATGCTTTTTACCTGTTGTTGATCGGAGGAGTGGGATCAATTTAATCCGTAATGTTTTATATAATAGTGGGTCAAACTTCAGTCGGTTGAATTATAGTGGCTTTTACACTGTTATTCTGGAGCGAGGGGATGAAATCATTTCTGCAGCATCTATCAGGTTCCATGGAACTAAGTTAGCAGAGATGCCATTTATCGGAACTCGCCATATATATAGGCGCCAGGGGATGTTTCGCCGTCTTTTTTCTGCCATTGAATCGGCTCTTTGCACTCTGAAGGTTGAGAAACTGGTTATTCCTGCAATTGCTGAACTCATGCATACATGGACAGCAGTTTTTGGCTTCACACATCTTGAGGAATCACTCAGGCAAGAAATGAGGTCATTGAATATGTCGGTTTTCCCTGGTATAGATATGTTGCAGAAGCTGTTTGGGGAGCAAGGAAAACATGTGTGCAATACAACCACAGCAGGTTTTACAAAAATGGGAAATGGAGACAATGTTTTTATTGAGACCAAAATGGCGAATAGGTCACAGATGGATTCCTCAACTCTGCTAGATCCTCATGGAAGTGATGATGCTAGTTCAAATCCTGCCAATGAGATGAATGAAGATTGTAGTGATGCTTCTCAAGAACTAAACAATCACGTTTTGGTTGACAGGACAGTGTGTTCTAAATCTCATCCTGAGGAAAGGTTATCTGATTCAGTTTCAGATAAATGTGTTTCTCCTTCTAGTCATGGTACCCCAGAAATGAACAATAAAATAGTAATGGCTCCTCCTGTTGATAAACTGAATATTTCTTCGTCCAAATGTCAATCCATATCACCGAATGTCACTTCTGTGAGTAGTCACCCATTAAATATTCCTGATTGCCATGAAATTCAAGCTTTGGTTCTGGAAACTGCTTGTTATGGCCCTTGTTCAGCAGAAAACCTTGACAGGAAATGTCACTCGTTCTCTGCTATGAATTGTGATCCATCGGAGCTTGACAATAATCCAGTATTGCATTCTCCACTGGCAGACAATACTCCGTCTTCTGAAGAGGTTTATGTGAATGATGCATATGAGGCTCTTGAAGCTGTTCCGTCAGGGAGTTTATCTGAAGAGAATATTACCAAGGAAAATAATCAAAATGTAGATGTCTCTGATTCTGTTCTCAATCATGCTGATGAGAGTTTGTTGCAAGTAAGATCTGATTCCAATGGGGAAATCGGCCATCAGAGTGAAAAATTTTTACATTTGAACATAGGAGTTGCTTCAAATGAAATGTATTTTGATGAAAGTGGCCTAAATGCTTCCGGTGATAGTTCTGAGACTGATCCAATCTAA 3732 0.4118 MPPGRRLGPETIRVCNGLTAFERGMVGGPEIGRKRDRMEKIRGDGEGMIAENGSEKREKKRNKLNVYDFNEYKGKDVEKMRRRHFDNNGVGFGGRFIGSMHAGRSGIDRELEMGSSRYILDKRKNSYHDRPSGLYPGDNVDHSRFKMNRDGAQLPLTLSREKFNSDESIRVQGKNGVLKVMVNKKKVDRPLEHYDQCKPVENRQRLKTEGTAKRNVLIHPPSYLEAKCVEKPELLVRPEKKQITPRKSLSSKDSRGDEWDSDNSDTSLKPGMRNTESQKPTKRIMSEDEQTPMHEKLPTTKAKEGKIKRGSGTEKQKLREKIREMLLNAGWIIDYRPRRNRDYLDAVYINSAGTAYWSIIKAYDALQKQLNDDANEAKAKGDSSSFAPIADEVLSQLTRKTKKKMEKELKKKKKKRYDSESDSEREPHIRRSASNKHDMNSMDSDSNEEKLSSFIKQGSKSMKNIMIENTVASASSKSQNATHHSNDGIEKPFSGSDPHLLHGRKSRKHGRCTLLVRSSNKGLNSESDGFVPYTGKRTVLSWLIDSGTVELSQKVQYRRRKKVLLEGWITRDGIHCGCCSKILTVSKFELHAGSKLLRPYQNIYLESGVSLLQCQIDAWNRQQNYEKIGFHSVDIDGDDPNDDTCGICGDGGDLICCDGCPSTFHQNCLDIQMLPPGEWRCPNCTCKFCGIAGETSKKDDATVYVLHTCNLCEKKYHDSCTKEVDALPNSFNTSGPSFCGKECKELFEQLKKYLGTKHELEAGFSWSLVHRTDEDSEAASRGITQRVECNSKLAIALTVMDECFLPVVDRRSGINLIRNVLYNSGSNFSRLNYSGFYTVILERGDEIISAASIRFHGTKLAEMPFIGTRHIYRRQGMFRRLFSAIESALCTLKVEKLVIPAIAELMHTWTAVFGFTHLEESLRQEMRSLNMSVFPGIDMLQKLFGEQGKHVCNTTTAGFTKMGNGDNVFIETKMANRSQMDSSTLLDPHGSDDASSNPANEMNEDCSDASQELNNHVLVDRTVCSKSHPEERLSDSVSDKCVSPSSHGTPEMNNKIVMAPPVDKLNISSSKCQSISPNVTSVSSHPLNIPDCHEIQALVLETACYGPCSAENLDRKCHSFSAMNCDPSELDNNPVLHSPLADNTPSSEEVYVNDAYEALEAVPSGSLSEENITKENNQNVDVSDSVLNHADESLLQVRSDSNGEIGHQSEKFLHLNIGVASNEMYFDESGLNASGDSSETDPI 1243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1257g00161 1243 ProSiteProfiles Zinc finger PHD-type profile. 642 687 IPR019787 -
Gabi1257g00161 1243 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 834 918 IPR016181 -
Gabi1257g00161 1243 MobiDBLite consensus disorder prediction 280 315 - -
Gabi1257g00161 1243 MobiDBLite consensus disorder prediction 474 489 - -
Gabi1257g00161 1243 CDD PHD2_CHD_II 645 684 - -
Gabi1257g00161 1243 MobiDBLite consensus disorder prediction 237 315 - -
Gabi1257g00161 1243 MobiDBLite consensus disorder prediction 980 1008 - -
Gabi1257g00161 1243 ProSitePatterns Zinc finger PHD-type signature. 645 684 IPR019786 -
Gabi1257g00161 1243 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 633 733 IPR013083 -
Gabi1257g00161 1243 MobiDBLite consensus disorder prediction 265 279 - -
Gabi1257g00161 1243 Pfam Tify domain binding domain 567 617 IPR032308 -
Gabi1257g00161 1243 SUPERFAMILY FYVE/PHD zinc finger 634 690 IPR011011 -
Gabi1257g00161 1243 SMART PHD_3 644 685 IPR001965 -
Gabi1257g00161 1243 MobiDBLite consensus disorder prediction 237 264 - -
Gabi1257g00161 1243 Pfam PHD-finger 645 687 IPR019787 -
Gabi1257g00161 1243 MobiDBLite consensus disorder prediction 412 445 - -
Gabi1257g00161 1243 PANTHER PHD FINGER PROTEIN 12 277 1081 IPR042163 GO:0003714|GO:0045892
Gabi1257g00161 1243 MobiDBLite consensus disorder prediction 1038 1052 - -
Gabi1257g00161 1243 MobiDBLite consensus disorder prediction 401 451 - -
Gabi1257g00161 1243 MobiDBLite consensus disorder prediction 474 495 - -
Gabi1257g00161 1243 Coils Coil 395 422 - -
Gabi1257g00161 1243 Coils Coil 360 380 - -
Gabi1257g00161 1243 MobiDBLite consensus disorder prediction 1028 1055 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1257g00161 Gabi-Chr1257 1529513 1537135 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1257g00161 31 942 PHD Transcription Factor Family AT4G14920 51.991 0.0 877
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gabi1257g00161 TDBD 9.5e-22 No_clan