Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1257g00150 ATGAACACCCCAAGAGGTGAAGGTAGTGACTATGATAATGCCACTATTTCAACTCATGGTTGGGGAAACATAAAGCTCACAAACCCTTCTTTTATGTGTTGTTCAGGTCCTCCTTTAACAGCCATAGATAAGTTCTTAGGGAACCAACAAAATCACTTCCCTCCGAAGCAACACCCACAGAGCCCTCCGAAGCAACACCCACAGAGCAATATTGCAAAGAACAACCATGCAAGTGTTTTTGATGATGAGTTTTGCAGTTTTGCTTGTTCGGGTGATTCAACCTATAAGTATGATCTCTTGCATAACACTCAAGAAGCAAGCTTTATAACTCATCACCTCTTACCAAATGAAGAGGCTCTGAATTGGACACACCAAAACCCTACGTTGTGTCAGAAAGATGTGCAAGTTTTAGGGAATAATGCAAAAGTTGTGGGAAGAATGCCTAAGAAAGGATCTTCTGTGTCTCTAGTCAAAGGAAAATGGAGTGAAGAAGAAGACAGGAAACTGTTAAAGTTGGTGGAGCAATATGGTGTAAGAAAATGGTCTCAAATAGCTGAGAATTTGGATGGAAGAGCTGGCAAGCAGTGTAGCGAGAGATGGCGTAATCATCTGGGCCCAGATATTAAGAAAGATAGTTGGAGTGAAGAAGAGGAGAAGATATTAGTGGAAACACATGCTAAGATTGGAAATCGTTGGGCAGAGATGGCAAAGCTTATTCCAGGAAGAACAGAGAATGCAATAAAGAACCATTGGAATGCAACTAAAAGGAGGCAAAATTCAAGGAGAAAGAATAACAGGACAGTAACTTCTAATGGAAAGCCACAATCCTCTATACTTGAAGACTATATCAAAAGCAAGACTCTTAATAGCACCACCTTCATTAACCCCACAAAGAGCATCATCACTGCCACAACAACTACTCCTCCCTTTAGCACTACAACTACAACAACTCAATCACGCCTCGTTTTATCTCAACTCTCTGATTCTGATGACAATTCCTTATCCCCACAAGTTGCTGAATATGATGATGAGTTGCTTTTCATGCAACAACTTTTCAAGGAGAATCAGCCCCAACAACAACTTGCCAATGTTGAATCTCTTAATGGTGATCAACTTCTCACTGATGTGATTGAGGGTGGTTTCCCTCATTCCAACCCAAATCCAAGTTCACATAACATGTACTTGGATGAGAGTCGTCTCACACCTAGAAAGACTCCTACACCTATCAATTACCTTGATTCTGATCTCTCTCTCTCTCACTTGCTGAATGGAACTGACAGTTCATCACCTTGTTGTGATTATGAGATTCAAAACCAGAACATGGACTAG 1329 0.4093 MNTPRGEGSDYDNATISTHGWGNIKLTNPSFMCCSGPPLTAIDKFLGNQQNHFPPKQHPQSPPKQHPQSNIAKNNHASVFDDEFCSFACSGDSTYKYDLLHNTQEASFITHHLLPNEEALNWTHQNPTLCQKDVQVLGNNAKVVGRMPKKGSSVSLVKGKWSEEEDRKLLKLVEQYGVRKWSQIAENLDGRAGKQCSERWRNHLGPDIKKDSWSEEEEKILVETHAKIGNRWAEMAKLIPGRTENAIKNHWNATKRRQNSRRKNNRTVTSNGKPQSSILEDYIKSKTLNSTTFINPTKSIITATTTTPPFSTTTTTTQSRLVLSQLSDSDDNSLSPQVAEYDDELLFMQQLFKENQPQQQLANVESLNGDQLLTDVIEGGFPHSNPNPSSHNMYLDESRLTPRKTPTPINYLDSDLSLSHLLNGTDSSSPCCDYEIQNQNMD 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1257g00150 442 MobiDBLite consensus disorder prediction 48 71 - -
Gabi1257g00150 442 PANTHER MYB PROTEIN-RELATED 158 271 - -
Gabi1257g00150 442 ProSiteProfiles Myb-like domain profile. 153 204 IPR001005 -
Gabi1257g00150 442 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 209 259 IPR017930 -
Gabi1257g00150 442 SMART sant 209 257 IPR001005 -
Gabi1257g00150 442 SMART sant 157 206 IPR001005 -
Gabi1257g00150 442 FunFam Transcriptional activator Myb isoform A 157 210 - -
Gabi1257g00150 442 CDD SANT 160 204 IPR001005 -
Gabi1257g00150 442 Pfam Myb-like DNA-binding domain 161 219 - -
Gabi1257g00150 442 SUPERFAMILY Homeodomain-like 155 251 IPR009057 -
Gabi1257g00150 442 ProSiteProfiles Myb-like domain profile. 205 255 IPR001005 -
Gabi1257g00150 442 CDD SANT 212 255 IPR001005 -
Gabi1257g00150 442 MobiDBLite consensus disorder prediction 254 274 - -
Gabi1257g00150 442 Gene3D - 211 280 - -
Gabi1257g00150 442 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 153 208 IPR017930 -
Gabi1257g00150 442 Gene3D - 157 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1257g00150 Gabi-Chr1257 1371105 1373577 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1257g00150 35 428 MYB Transcription Factor Family AT5G58850 39.609 1.03e-73 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi1257g00150 Myb_DNA-bind_6 1.7e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1257g00150 K09422 - gmx:100786295 372.859