Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1257g00149 ATGCTGGCGAATCATCTCCAGAACGGAATCGAAACGGCGAGACTCGTTTGGTCGCGGATTCCCAATTCAGAAGAATCACAGTTCCTCGACGACGCCGGTGGGCTATTGAAGAAGAACGATGGAAGCGGTGCTGAGAGCCTTGACTACGAAGTCATTGAGAATTTTGCTTATCGCGAAGAGCAGGCGCAAAGAGGGAAGGTGTATGTGAGTTATTTGCTGGTGGTGAAATGGTTCTTTGCCTTGCTCATTGGCATTTGTACTGGTCTTGCTGCTGTTTTCATCAATATTTCCGTTGAAAATTTTGCTGGCTGGAAGTTCTCAGTGACATTTAATATAATTCAGAAATCATATGTTGCTGGCTTTGTTGTATATGTCCTGATCAACTTGGTGTTGGTGTATTCTTCTGTCTATATTGTCACACAATTTGCACCAGCAGCTGCTGGATCTGGTATTCCTGAAATCAAGGGTTACTTAAATGGAGTTGATATTCATGGCATCCTTCTTTTCAGAACTTTGATTGGAAAGATATTTGGAAGCATTGGTTCAGTGGGAGGAGGCCTTGCTTTGGGTAAAGAAGGTCCTCTTGTCCATACTGGTGCTTGTATTGCTTCTTTGCTTGGACAAGGTGGATCCACAAAGTATCATCTAAATTCAAGGTGGTTTCAAGTATTCAAAAGTGATAGGGATCGCCGTGATCTTGTAACCTGTGGCTGTGCAGCTGGAGTTGCTGCTGCATTTAGAGCTCCGGTTGGTGGTGTATTGTTTGCATTGGAAGAGGTTACATCTTGGTGGAGGAGTCAACTGATGTGGCGTGTCTTCTTCACTTCTGCTATTGTAGCTGTTGTAGTGCGAACTGCAATGGGGTGGTGTAAGAGTGGAAAATGTGGACATTTTGGGTCAGGCGGATTCATAATATGGGATATATCAGATGGTCAAGAGGATTATTCCTTTGCAGAGCTATTGCCAATGGCTATTATTGGGGTTATTGGAGGTCTACTAGGAGCTTTATTTAACCAGCTTACACTTTATATTACAACTTGGCGTCGAAATCATCTTCACAAGAAAGGAAGCCGAGTCAAGATTGTTGAAGCATGCCTTGTCTCCGTTCTAACATCAGTCATTTCATTTGGTTTGCCGCTTCTAAGAAAATGTACTCCATGCCCTGAATCTGATCCTGCATCTGGTATTGAATGTCCACGGCCTCCAGGAATGTATGGGAATTATGTAAATTTCTTTTGCAGCAAAGATAACGAATACAATGATCTTGCAACTATTTTCTTCAATACACAGGATGATGCCATAAGGAATTTGTTCAGTGCAAAAACGATACATGAGTACAGTTCCCAAAGTTTATTAACCTTTTTGGTTATGTTTTATGCTTTAGCAGTGGTGACATTTGGTACTGCTGTGCCAGCTGGTCAATTTGTTCCTGGTATAATGATAGGATCAACATATGGACGTCTTGTTGGCATGTTTGTTGTAAAATATTACAGAAAGCTCAACATTGAAGAGGGAACGTATGCTTTGCTGGGAGCTGCATCTTTTCTTGGAGGTTCAATGCGGATGACAGTGTCTCTGTGTGTCATTATGGTTGAAATCACAAATAACTTAAAATTTTTACCTCTGATTATGCTGGTTCTTCTTATATCGAAGGCTGTTGGTGATGCTTTTAATGAGGGTATTTATGAAGAGCAGGCTCGATTGAGGGGTATTCCGTTACTGGAATCAAGGCCTAAATATGAAATGCGTAATATAACAGCAATGGAGGCCTGTCGGAGTGAAAGGGTGGTCTCTTTCCCTCGTGTTGTTAAGATTTCAGATGTAGTTTCCATTCTGCAGAGCAACAAACACAATGGTTTTCCAGTGATTGATCACACAAGAAGTGGAGAACCACTTGTTATTGGATTAGTGCTTCGGAGTCATTTATTGGTGATTCTGCAGTCAAAAGTTGATTTCCAGCATAGTCCTTTATCCTCTGATCCCAGAGGTGGGGGCAGGTCAATAAGGCATGATTCTGGTGAATTTGCAAAGCCTGTTTCTAGTAAAGGAATACGTATTGATGATATACATCTAAGTTCTGATGACTTGGAAATGTACATAGATCTTGCCCCATTTTTGAATCCCTCACCATATATTGTGCCAGAAGATATGTCCTTGACAAAGGTATACAATCTTTTCCGCCAACTTGGTTTGAGGCATTTATTTGTTGTTCCTCGTCCATCTCGTGTGCTTGGTTTGATAACCAGAAAAGATTTGTTGATTGAGGACACAGAAAATGTGAATAATCCATTAGAGCTCCAGTCAACTAGTTTAAATTTGTGCAACAGTGATGCCTTTGCATTGTAA 2346 0.413 MLANHLQNGIETARLVWSRIPNSEESQFLDDAGGLLKKNDGSGAESLDYEVIENFAYREEQAQRGKVYVSYLLVVKWFFALLIGICTGLAAVFINISVENFAGWKFSVTFNIIQKSYVAGFVVYVLINLVLVYSSVYIVTQFAPAAAGSGIPEIKGYLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLNSRWFQVFKSDRDRRDLVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRTAMGWCKSGKCGHFGSGGFIIWDISDGQEDYSFAELLPMAIIGVIGGLLGALFNQLTLYITTWRRNHLHKKGSRVKIVEACLVSVLTSVISFGLPLLRKCTPCPESDPASGIECPRPPGMYGNYVNFFCSKDNEYNDLATIFFNTQDDAIRNLFSAKTIHEYSSQSLLTFLVMFYALAVVTFGTAVPAGQFVPGIMIGSTYGRLVGMFVVKYYRKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKFLPLIMLVLLISKAVGDAFNEGIYEEQARLRGIPLLESRPKYEMRNITAMEACRSERVVSFPRVVKISDVVSILQSNKHNGFPVIDHTRSGEPLVIGLVLRSHLLVILQSKVDFQHSPLSSDPRGGGRSIRHDSGEFAKPVSSKGIRIDDIHLSSDDLEMYIDLAPFLNPSPYIVPEDMSLTKVYNLFRQLGLRHLFVVPRPSRVLGLITRKDLLIEDTENVNNPLELQSTSLNLCNSDAFAL 781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1257g00149 781 CDD ClC_6_like 45 574 - -
Gabi1257g00149 781 Gene3D Clc chloride channel 69 575 - -
Gabi1257g00149 781 PRINTS Plant CLC chloride channel signature 292 299 IPR002251 GO:0005247|GO:0006821|GO:0016020
Gabi1257g00149 781 PRINTS Plant CLC chloride channel signature 274 284 IPR002251 GO:0005247|GO:0006821|GO:0016020
Gabi1257g00149 781 PRINTS Plant CLC chloride channel signature 422 438 IPR002251 GO:0005247|GO:0006821|GO:0016020
Gabi1257g00149 781 PRINTS Plant CLC chloride channel signature 50 58 IPR002251 GO:0005247|GO:0006821|GO:0016020
Gabi1257g00149 781 PRINTS Plant CLC chloride channel signature 260 268 IPR002251 GO:0005247|GO:0006821|GO:0016020
Gabi1257g00149 781 Gene3D - 583 759 IPR046342 -
Gabi1257g00149 781 ProSiteProfiles CBS domain profile. 706 764 IPR000644 -
Gabi1257g00149 781 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 37 757 - -
Gabi1257g00149 781 SUPERFAMILY CBS-domain pair 579 753 IPR046342 -
Gabi1257g00149 781 Pfam Voltage gated chloride channel 134 554 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gabi1257g00149 781 PRINTS Chloride channel signature 175 194 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gabi1257g00149 781 PRINTS Chloride channel signature 144 161 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gabi1257g00149 781 PRINTS Chloride channel signature 239 258 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gabi1257g00149 781 PRINTS Chloride channel signature 470 490 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gabi1257g00149 781 PRINTS Chloride channel signature 561 575 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gabi1257g00149 781 PRINTS Chloride channel signature 505 521 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gabi1257g00149 781 PRINTS Chloride channel signature 523 542 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gabi1257g00149 781 SMART cbs_1 709 757 IPR000644 -
Gabi1257g00149 781 SMART cbs_1 595 647 IPR000644 -
Gabi1257g00149 781 SUPERFAMILY Clc chloride channel 54 576 IPR014743 -
Gabi1257g00149 781 FunFam Chloride channel ClC3 68 385 - -
Gabi1257g00149 781 Pfam CBS domain 595 646 IPR000644 -
Gabi1257g00149 781 Pfam CBS domain 707 753 IPR000644 -
Gabi1257g00149 781 CDD CBS_pair_voltage-gated_CLC_euk_bac 596 753 - -
Gabi1257g00149 781 FunFam Chloride channel protein 698 779 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1257g00149 Gabi-Chr1257 1357485 1366884 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1257g00149 1 770 Ion Channels AT5G26240 83.268 0.0 1250
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1257g00149 K05016 - gmx:100811908 1439.86