Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1257g00141 ATGGAGCTTCAGAGGCGGCCAGATCAGTGCCTCCCGGAGAGGAAAGGCCAGAAGAGGAAGCTCGAGGAGGAATTCGAAGAGGACCGACAGATCTCCGCGCCTCCCACCGGCGACGCCCGTGACGCTCTCCTCTCCGATGTCAAGGAACAGGTCACCATCCTCGAGTCCACTTTCTCGTGGAGGGAATCCGATCGAGCAGCCGCGAAGCGCGCTACTCACGCCCTCGCTGATCTTGCCAAAAATGAGGAAGTGGTGAACGTGATTGTTGAAGGAGGCGCCATTCCGGCTTTGGTTAAGCATCTTCAAGCACCTCCTTTGGCTGAAAACGACCGTGTTCAGAATCCAATGCCGTTTGAGCACGAGGTCGAGAAAGGGAGTGCTTTCGCACTTGGACTTCTTGCCGTCAAGCCAGAACATCAACAGCTAATTGTTGATAGTGGTGCCTTAAGACATCTTGTTGATCTTTTGAAGAGGCATAATAATGGCTTAACATCTCGTGCCATTAATAGTCTCATTCGGAGGGCGGCCGATGCAATCACTAATCTTGCTCACGAGAACAGCAGTATTAAAACTCGTGTCAGGATGGAAGGTGGAATTCCACCACTTGTTCATTTGCTTGAATTCGCCGATACAAAGGTGCAAAGAGCAGCTGCTGGTGCATTGCGAACCCTGGCTTTTAAAAATGATGAAAATAAAAATCAGATTGTTGATTGCAATGCTCTTCCAACTCTGATTCTAATGCTTCATTCAGAAGATGCTGCTATTCATTATGAAGCGGTTGGTGTGATTGGAAATCTGGTCCACTCTTCCCCTAATATAAAAAAAGAAGTTCTTCTTGCTGGAGCTTTACAACCTGTTATTGGATTACTTAGCTCCTGTTGCTCTGAAAGCCAGAGGGAAGCAGCCTTGTTACTTGGACAGTTTGCAGCAACTGATTCAGACTGCAAGGTTCACATTGTGCAGAGAGGTGCCGTCCGACCTCTGATAGAGATGCTTCAGTCCCCTGATATTCAGCTCAGAGAAATGTCTGCCTTTGCATTGGGGAGATTGGCCCAGGACACACATAACCAAGCTGGTATCGCACACAATGGTGGCTTGATGCCATTACTGAAGCTTCTTGACTCAAAAAATGGGTCTCTGCAACATAATGCTGCTTTTGCTCTTTATGGCCTTGCAGATAATGAGGATAATGTGTCAGATTTTATTAGGGTAGGTGGAATTCAGAGACTGCAGGATGGAGAGTTTATTGTTCAAGCAACTAAGGATTGTGTTTCAAAGACATTGAAAAGATTAGAAGAGAAGATTCATGGCCGTGTGCTCAACCATTTATTATATCTTATGCGGGTTTCAGAAAAGGCTTTCCAAAGACGAGTTGCGTTGGCTCTTACTCATCTATGTTCTGCAGATGATCAGAGAAAAATATTTATTGATCATCATGGTTTAGAGTTGCTTATTGGGCTTCTTGGTTCTTCCAGCCCTAAGCAGCAACTTGATGGAGCTGTGGCTTTATGCAAGTTGGCCAACAAAGCTATGACTCTATCTCCTGTAGATGCTGCTCCCCCTTCTCCAACACCCCAGGTTTATTTAGGAGAGCAGTATGTAAACAATGCTACCTTGTCTGACGTTACATTTTTGGTTGAAGGTAAAAGGTTTTATGCTCACAGAATCTGTCTACTTGCATCTTCAGATGCATTTCGTGCAATGTTTGATGGTGGTTATAGGGAGAAGGATGCAAGGGACATAGAGATTCCAAATATTAGATGGGAGGTTTTTGAGCCAATGATGAGATTTATATATACTGGATCAGTTGATGTTACTCTTGATATTGCCCAAGATCTCCTCCGAGCAGCTGATCAATATCTTCTAGAAGGACTTAAGAGACTCTGCGAATATACAATTGCACAGGATATATCACTGGATAACGTGTCAAGTATGCATGAACTTTCGGATGCCTTTAATGCTATATCGTTGAGGCACACATGCATCCTTTTTATCTTGGAGCACTTTGATAAATTGAGTGCAAGGCCAGGACACTCTCATCTGATTCAGCGTATAATACCAGAGATCCGCAATTACTTTGTTAAAGCTCTTACAAAGGCCAATTCCAGCATGCAGCCGTAG 2121 0.4474 MELQRRPDQCLPERKGQKRKLEEEFEEDRQISAPPTGDARDALLSDVKEQVTILESTFSWRESDRAAAKRATHALADLAKNEEVVNVIVEGGAIPALVKHLQAPPLAENDRVQNPMPFEHEVEKGSAFALGLLAVKPEHQQLIVDSGALRHLVDLLKRHNNGLTSRAINSLIRRAADAITNLAHENSSIKTRVRMEGGIPPLVHLLEFADTKVQRAAAGALRTLAFKNDENKNQIVDCNALPTLILMLHSEDAAIHYEAVGVIGNLVHSSPNIKKEVLLAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDIQLREMSAFALGRLAQDTHNQAGIAHNGGLMPLLKLLDSKNGSLQHNAAFALYGLADNEDNVSDFIRVGGIQRLQDGEFIVQATKDCVSKTLKRLEEKIHGRVLNHLLYLMRVSEKAFQRRVALALTHLCSADDQRKIFIDHHGLELLIGLLGSSSPKQQLDGAVALCKLANKAMTLSPVDAAPPSPTPQVYLGEQYVNNATLSDVTFLVEGKRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFEPMMRFIYTGSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLDNVSSMHELSDAFNAISLRHTCILFILEHFDKLSARPGHSHLIQRIIPEIRNYFVKALTKANSSMQP 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1257g00141 706 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 197 232 IPR000225 GO:0005515
Gabi1257g00141 706 SUPERFAMILY POZ domain 532 634 IPR011333 -
Gabi1257g00141 706 SUPERFAMILY ARM repeat 437 613 IPR016024 -
Gabi1257g00141 706 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 92 148 IPR000225 GO:0005515
Gabi1257g00141 706 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 1 704 IPR044282 -
Gabi1257g00141 706 SUPERFAMILY ARM repeat 60 411 IPR016024 -
Gabi1257g00141 706 FunFam Armadillo/beta-catenin repeat family protein 531 675 - -
Gabi1257g00141 706 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 147 197 IPR000225 GO:0005515
Gabi1257g00141 706 MobiDBLite consensus disorder prediction 1 34 - -
Gabi1257g00141 706 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 239 281 IPR000225 GO:0005515
Gabi1257g00141 706 SMART BTB_4 540 637 IPR000210 GO:0005515
Gabi1257g00141 706 Pfam Armadillo/beta-catenin-like repeat 228 267 IPR000225 GO:0005515
Gabi1257g00141 706 Pfam Armadillo/beta-catenin-like repeat 312 351 IPR000225 GO:0005515
Gabi1257g00141 706 Pfam Armadillo/beta-catenin-like repeat 193 225 IPR000225 GO:0005515
Gabi1257g00141 706 CDD BTB_POZ_ARIA_plant 527 642 - -
Gabi1257g00141 706 Gene3D - 415 515 IPR011989 -
Gabi1257g00141 706 SMART arm_5 353 393 IPR000225 GO:0005515
Gabi1257g00141 706 SMART arm_5 312 352 IPR000225 GO:0005515
Gabi1257g00141 706 SMART arm_5 228 268 IPR000225 GO:0005515
Gabi1257g00141 706 SMART arm_5 270 310 IPR000225 GO:0005515
Gabi1257g00141 706 SMART arm_5 468 508 IPR000225 GO:0005515
Gabi1257g00141 706 SMART arm_5 186 226 IPR000225 GO:0005515
Gabi1257g00141 706 SMART arm_5 81 135 IPR000225 GO:0005515
Gabi1257g00141 706 SMART arm_5 136 184 IPR000225 GO:0005515
Gabi1257g00141 706 Gene3D - 351 413 IPR011989 -
Gabi1257g00141 706 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 364 406 IPR000225 GO:0005515
Gabi1257g00141 706 ProSiteProfiles BTB domain profile. 540 607 IPR000210 GO:0005515
Gabi1257g00141 706 Gene3D Potassium Channel Kv1.1; Chain A 521 669 IPR011333 -
Gabi1257g00141 706 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 323 365 IPR000225 GO:0005515
Gabi1257g00141 706 Pfam BTB/POZ domain 533 635 IPR000210 GO:0005515
Gabi1257g00141 706 Gene3D - 42 350 IPR011989 -
Gabi1257g00141 706 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1257g00141 Gabi-Chr1257 1303930 1311080 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1257g00141 296 410 U-box Gene Family AT3G46510 28.696 2.98e-06 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Gabi1257g00141 BTB 6.7e-26 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1257g00141 - - gmx:100819832 1285.4