Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1257g00135 ATGGAGCAAACACTGATCGGTGCCCTCAACCTCGTTTCTCGCAACCTCCCTCTTCCTTCCGATCTCTTTGACGCCGTTTCTTCTATCTATCACGGATCTAACCACCTCAACTCCTTCGCCGATGCACGGGATTCCACATTGGCAGACCTTCAAGATGCACTGTTGAAGCAACGCCCTAATGGTGTCTCCAGTTCTACATTAAACAAAGCAATCGAAAGCCGTTTTCAAACTCAGATTCAGCATCGCTTAGCTCAACTTGAAGGATTGCCTTCAAGCAGGGGAGAAGACCTACAGACCAAGTGCCTGCTTGAGCTTTATGGACTAAATCTAGCAGAGTTGCAGAGGAAGGTTCGGACTGACGTAAGTTCTGAATACTGGCTCAATGTTATATGTGCATATCCTGACAGGCAACTGTTTGACTGGGGCATGATGCGGTTGCGTCGTCCACTTTATGGCGTTGGAGATCCATTTGCCATGGATGCTGATGATCAAATAAGGAAGAAACGGGATGCTGAGAGACTATCAAGATTAGAAGTGCAGGCAAAAAATCACGTAGAGACCAGAAAGAGAAGATTTTTTGCAGAAATACTGAATGCTGTCCGTGAGTTCCAATTACAAATTCAAGCTTCTTTGAAGAGGAGAAAACAGAGGAATGACGGTGTCCAGGCATGGCATGGAAGGCAAAGACAACGTGCAACGCGGGCTGAGAAATTGAGATTCCAAGCCTTAAAGGCTGATGATCAGGAAGCTTACATGCAAATGGTGAAAGAGAGTAAGAATGAAAGATTAACTATTCTTCTTGAAGAAACAAATAAACTACTTGTAAATTTGGGAGCAGCCGTTCAACGTCAAAAGGACTTAAAACAATCAGATGGTATTGAACCCTTGGAAGATTCAGTAGCTGAATTATCAGAATCAGTTGCTTTGAAGAATGAAATTTTTAAGGAATCACCTCTTGAGGAAGATGTGGAGTTGATAGATTCTGATCATAATGGTGACACTAGTGATTTACTTGAAGGTCAGCGGCAATACAATTCTGCCATACATTCAATTCAAGAAAAGGTAACGGAGCAGCCATCTAGTCTTCAAGGTGGGGAATTAAGACCATACCAGCTAGAAGGGCTCCAGTGGATGCTTTCTTTGTTTAATAACAACTTGAATGGAATTTTAGCCGATGAAATGGGGCTTGGGAAGACTATACAAACCATTTCGTTGATAGCGTATCTTTTGCAACACAAGGGTGTGACTGGTCCTTACTTGATTGTGGCGCCAAAGGCTGTTCTGCCAAATTGGATCAGTGAATTCTCAACATGGGCTCCTAGCATCACAACTATTCTTTATGATGGACGGCTGGATGAGAGGAAAGCAATGAAGGAAGAGTTGTCAGGGGAGGGGAAATTTAATGTTTTGATAACGCACTATGATCTTATAATACGAGACAAAGCATTTCTCAAGAAAATTCATTGGAAGTACTTGATTGTGGATGAAGGGCATCGTTTGAAGAATCATGAGTGTGCTCTAGCAAGAACCCTGGACTCTGGCTATCACATTCAACGAAGACTTCTGTTGACTGGTACCCCAATTCAGAACAGTTTGCAGGAATTGTGGTCCCTGCTCAATTTCCTCCTTCCAAACATTTTCAATTCAGTTCAGAATTTTGAGGACTGGTTTAATGCTCCCTTTGCAGACCGAGTTGATGTCTCTCTAACTGATGAAGAACAGTTATTGATCATTCGGCGTCTGCATCAAGTAATAAGGCCCTTCATATTAAGAAGGAAAAAGGATGAGGTGGAAAAATATCTTCCCGGGAAATCTCAGGTCATACTCAAATGTGATATGTCAGCCTGGCAGAAAGTATATTATCAACAAGTCACAGACGTGGGCAGAGTTGGCTTAGACAATGGTTCTGGAAAATCAAAAAGTCTACAGAACTTGACAATGCAACTCAGAAAGTGTTGTAACCATCCCTACCTCTTTGTTGGAGACTATGATGTGTATAAACGTGAGGAGATTGTCAGAGCATCAGGGAAGTTTGAACTTCTTGACCGTCTACTTCCAAAACTTCGCAGAGCTGGTCATAGAGTCCTCCTTTTTTCACAAATGACTCGTCTCATGGACATTCTTGAAATTTATTTGCGACTTCATGATTATAAATTTCTTAGGCTTGATGGCTCAACAAAAACTGAGGAAAGAGGTTCCCTACTACGGGAATTCAATGCTCCTGACTCTCCATACTTTATGTTTCTCTTGAGCACCCGCGCTGGAGGTCTTGGTTTGAACTTGCAAACAGCAGATACTGTTATAATTTTTGACAGCGATTGGAACCCACAAATGGATCAACAAGCGGAGGATCGAGCCCATCGCATTGGGCAAAAAAAGGAAGTTAGAGTTTTTGTGTTAGTTAGTGTGGGATCTATTGAAGAGGTGATTTTAGAGCGCGCTAAACAAAAGATGGGCATTGATGCCAAAGTCATCCAGGCAGGGCTTTTCAACACAACTTCAACAGCCCAGGACAGAAGAGAAATGTTGGAGGAGATTATGCGTAGAGGTTCAAGCTCACTTGGGACAGATGTGCCAAGTGAGAGAGAAATTAACCGCCTTGCAGCCCGATCTGATGAGGAATTTTGGCTATTCGAGAAAATGGATGAAGAGAGAAGGCAAAAGGAGAATTACAGATCTCGACTCTTGGAAGAGCATGAACTGCCAGATTGGGTATACTCTCCACTAAATAAGGATGATAAGGTCAAAGCTTTTGACAGCGGTAGTGTTACTGGAAAGCGGAAAAGAAAAGAAGTGGTATATGCAGATACATTAAGTGATCTACAATGGATGAAGGCTATGGAGAACGGACAAGACATATCTAAGCTTTCAATTAAAGGGAAAAGAAGAGACCACCTCCCTGTAGACAATCATGCACAAGCCAGTGATGACATGGGGGCAGAAGAAAGGGTATTAGAGTTAAGGAGTGAAAGTGTCCCCATGGCCAATGAGGGATCAAGTGAAGATACTTTCAATGTGACCCCTGCCTCTAAGAGACTCAAGCCTGAAGAAATAAATTCCCAGAAACACGAAAACGAGGATGTCAGAGTAAGTGGTTTGAACGAGCATGTGTTTTCCTGGAATACTCACAGAAAGAAGAGATCGAGCTATCTTAGCCAGGGTTCATTATCTGATACTAGAGGGCAGAACTTGAACTGA 3198 0.4265 MEQTLIGALNLVSRNLPLPSDLFDAVSSIYHGSNHLNSFADARDSTLADLQDALLKQRPNGVSSSTLNKAIESRFQTQIQHRLAQLEGLPSSRGEDLQTKCLLELYGLNLAELQRKVRTDVSSEYWLNVICAYPDRQLFDWGMMRLRRPLYGVGDPFAMDADDQIRKKRDAERLSRLEVQAKNHVETRKRRFFAEILNAVREFQLQIQASLKRRKQRNDGVQAWHGRQRQRATRAEKLRFQALKADDQEAYMQMVKESKNERLTILLEETNKLLVNLGAAVQRQKDLKQSDGIEPLEDSVAELSESVALKNEIFKESPLEEDVELIDSDHNGDTSDLLEGQRQYNSAIHSIQEKVTEQPSSLQGGELRPYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTISLIAYLLQHKGVTGPYLIVAPKAVLPNWISEFSTWAPSITTILYDGRLDERKAMKEELSGEGKFNVLITHYDLIIRDKAFLKKIHWKYLIVDEGHRLKNHECALARTLDSGYHIQRRLLLTGTPIQNSLQELWSLLNFLLPNIFNSVQNFEDWFNAPFADRVDVSLTDEEQLLIIRRLHQVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDNGSGKSKSLQNLTMQLRKCCNHPYLFVGDYDVYKREEIVRASGKFELLDRLLPKLRRAGHRVLLFSQMTRLMDILEIYLRLHDYKFLRLDGSTKTEERGSLLREFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEEIMRRGSSSLGTDVPSEREINRLAARSDEEFWLFEKMDEERRQKENYRSRLLEEHELPDWVYSPLNKDDKVKAFDSGSVTGKRKRKEVVYADTLSDLQWMKAMENGQDISKLSIKGKRRDHLPVDNHAQASDDMGAEERVLELRSESVPMANEGSSEDTFNVTPASKRLKPEEINSQKHENEDVRVSGLNEHVFSWNTHRKKRSSYLSQGSLSDTRGQNLN 1065
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1257g00135 1065 Coils Coil 881 901 - -
Gabi1257g00135 1065 Gene3D - 337 591 IPR038718 -
Gabi1257g00135 1065 Gene3D - 598 896 IPR027417 -
Gabi1257g00135 1065 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 594 844 IPR027417 -
Gabi1257g00135 1065 SMART SnAC_2 883 944 IPR029295 GO:0042393
Gabi1257g00135 1065 CDD SF2_C_SNF 667 801 - -
Gabi1257g00135 1065 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 379 545 IPR014001 -
Gabi1257g00135 1065 SMART helicmild6 706 790 IPR001650 -
Gabi1257g00135 1065 MobiDBLite consensus disorder prediction 991 1065 - -
Gabi1257g00135 1065 SMART ultradead3 363 556 IPR014001 -
Gabi1257g00135 1065 Pfam Snf2-ATP coupling, chromatin remodelling complex 884 944 IPR029295 GO:0042393
Gabi1257g00135 1065 MobiDBLite consensus disorder prediction 1044 1065 - -
Gabi1257g00135 1065 MobiDBLite consensus disorder prediction 993 1007 - -
Gabi1257g00135 1065 FunFam Chromatin structure-remodeling complex protein SYD 358 601 - -
Gabi1257g00135 1065 Pfam Helicase conserved C-terminal domain 677 790 IPR001650 -
Gabi1257g00135 1065 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 680 847 IPR001650 -
Gabi1257g00135 1065 FunFam Probable ATP-dependent DNA helicase CHR12 598 896 - -
Gabi1257g00135 1065 MobiDBLite consensus disorder prediction 1015 1031 - -
Gabi1257g00135 1065 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 342 592 IPR027417 -
Gabi1257g00135 1065 Pfam SNF2-related domain 370 658 IPR000330 GO:0005524|GO:0140658
Gabi1257g00135 1065 PANTHER SNF2/RAD54 HELICASE FAMILY 159 986 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1257g00135 Gabi-Chr1257 1231216 1237895 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1257g00135 673 818 RAD5 or RAD16-like Gene Family AT5G43530 38.000 8.03e-22 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gabi1257g00135 SNF2_N 1.5e-68 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1257g00135 - - gmx:100775993 1892.47