Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1257g00134 ATGGAGCAAACACTGATCGGTGCCCTCAACCTCGTTTCTCGCAACCTCCCTCTTCCTTCCGATCTCTTTGACGCCGTTTCTTCTATCTATCACGGATCTAACCACCTCAACTCCTTCATTATTCTTATGCAGGCCGATGCACGGGATTCCACATTGGCAGACCTTCAAGATGCACTGTTGAAGCAACGCCCTAATGGTGTCTCCAGTTCTACATTAAACAAAGCAATCGAAAGCCGTTTTCAAACTCAGATTCAGCATCGCTTAGCTCAACTTGAAGGATTGCCTTCAAGCAGGGGAGAAGACCTACAGACCAAGTGCCTGCTTGAGCTTTATGGACTAAATCTAGCAGAGTTGCAGAGGAAGGTTCGGACTGACGTAAGTTCTGAATACTGGCTCAATGTTATATGTGCATATCCTGACAGGCAACTGTTTGACTGGGGCATGATGCGGTTGCGTCGTCCACTTTATGGCGTTGGAGATCCATTTGCCATGGATGCTGATGATCAAATAAGGAAGAAACGGGATGCTGAGAGACTATCAAGATTAGAAGTGCAGGCAAAAAATCACGTAGAGACCAGAAAGAGAAGATTTTTTGCAGAAATACTGAATGCTGTCCGTGAGTTCCAATTACAAATTCAAGCTTCTTTGAAGAGGAGAAAACAGAGGAATGACGGTGTCCAGGCATGGCATGGAAGGCAAAGACAACGTGCAACGCGGGCTGAGAAATTGAGATTCCAAGCCTTAAAGGCTGATGATCAGGAAGCTTACATGCAAATGGTGAAAGAGAGTAAGAATGAAAGATTAACTATTCTTCTTGAAGAAACAAATAAACTACTTGTAAATTTGGGAGCAGCCGTTCAACGTCAAAAGGACTTAAAACAATCAGATGGTATTGAACCCTTGGAAGATTCAGTAGCTGAATTATCAGAATCAGTTGCTTTGAAGAATGAAATTTTTAAGGAATCACCTCTTGAGGAAGATGTGGAGTTGATAGATTCTGATCATAATGGTGACACTAGTGATTTACTTGAAGGTCAGCGGCAATACAATTCTGCCATACATTCAATTCAAGAAAAGGTAACGGAGCAGCCATCTAGTCTTCAAGGTGGGGAATTAAGACCATACCAGCTAGAAGGGCTCCAGTGGATGCTTTCTTTGTTTAATAACAACTTGAATGGAATTTTAGCCGATGAAATGGGGCTTGGGAAGACTATACAAACCATTTCGTTGATAGCGTATCTTTTGCAACACAAGGGTGTGACTGGTCCTTACTTGATTGTGGCGCCAAAGGCTGTTCTGCCAAATTGGATCAGTGAATTCTCAACATGGGCTCCTAGCATCACAACTATTCTTTATGATGGACGGCTGGATGAGAGGAAAGCAATGAAGGAAGAGTTGTCAGGGGAGGGGAAATTTAATGTTTTGATAACGCACTATGATCTTATAATACGAGACAAAGCATTTCTCAAGAAAATTCATTGGAAGTACTTGATTGTGGATGAAGGGCATCGTTTGAAGAATCATGAGTGTGCTCTAGCAAGAACCCTGGACTCTGGCTATCACATTCAACGAAGACTTCTGTTGACTGGTACCCCAATTCAGAACAGTTTGCAGGAATTGTGGTCCCTGCTCAATTTCCTCCTTCCAAACATTTTCAATTCAGTTCAGAATTTTGAGGACTGGTTTAATGCTCCCTTTGCAGACCGAGTTGATGTCTCTCTAACTGATGAAGAACAGTTATTGATCATTCGGCGTCTGCATCAAGTAATAAGGCCCTTCATATTAAGAAGGAAAAAGGATGAGGTGGAAAAATATCTTCCCGGGAAATCTCAGGTCATACTCAAATGTGATATGTCAGCCTGGCAGAAAGTATATTATCAACAAGTCACAGACGTGGGCAGAGTTGGCTTAGACAATGGTTCTGGAAAATCAAAAAGTCTACAGAACTTGACAATGCAACTCAGAAAGTGTTGTAACCATCCCTACCTCTTTGTTGGAGACTATGATGTGTATAAACGTGAGGAGATTGTCAGAGCATCAGGGAAGTTTGAACTTCTTGACCGTCTACTTCCAAAACTTCGCAGAGCTGGTCATAGAGTCCTCCTTTTTTCACAAATGACTCGTCTCATGGACATTCTTGAAATTTATTTGCGACTTCATGATTATAAATTTCTTAGGCTTGATGGCTCAACAAAAACTGAGGAAAGAGGTTCCCTACTACGGGAATTCAATGCTCCTGACTCTCCATACTTTATGTTTCTCTTGAGCACCCGCGCTGGAGGTCTTGGTTTGAACTTGCAAACAGCAGATACTGTTATAATTTTTGACAGCGATTGGAACCCACAAATGGATCAACAAGCGGAGGATCGAGCCCATCGCATTGGGCAAAAAAAGGAAGTTAGAGTTTTTGTGTTAGTTAGTGTGGGATCTATTGAAGAGGTGATTTTAGAGCGCGCTAAACAAAAGATGGGCATTGATGCCAAAGTCATCCAGGCAGGGCTTTTCAACACAACTTCAACAGCCCAGGACAGAAGAGAAATGTTGGAGGAGATTATGCGTAGAGGTTCAAGCTCACTTGGGACAGATGTGCCAAGTGAGAGAGAAATTAACCGCCTTGCAGCCCGATCTGATGAGGAATTTTGGCTATTCGAGAAAATGGATGAAGAGAGAAGGCAAAAGGAGAATTACAGATCTCGACTCTTGGAAGAGCATGAACTGCCAGATTGGGTATACTCTCCACTAAATAAGGATGATAAGGTCAAAGCTTTTGACAGCGGTAGTGTTACTGGAAAGCGGAAAAGAAAAGAAGTGGTATATGCAGATACATTAAGTGATCTACAATGGATGAAGGCTATGGAGAACGGACAAGACATATCTAAGCTTTCAATTAAAGGGAAAAGAAGAGACCACCTCCCTGTAGACAATCATGCACAAGCCAGTGATGACATGGGGGCAGAAGAAAGGGTATTAGAGTTAAGGAGTGAAAGTGTCCCCATGGCCAATGAGGGATCAAGTGAAGATACTTTCAATGTGACCCCTGCCTCTAAGAGACTCAAGCCTGAAGAAATAAATTCCCAGAAACACGAAAACGAGGATGTCAGAGTAAGTGGTTTGAACGAGCATGTGTTTTCCTGGAATACTCACAGAAAGAAGAGATCGAGCTATCTTAGCCAGGGTTCATTATCTGATACTAGAGGGCAGAACTTGAACTGA 3213 0.4258 MEQTLIGALNLVSRNLPLPSDLFDAVSSIYHGSNHLNSFIILMQADARDSTLADLQDALLKQRPNGVSSSTLNKAIESRFQTQIQHRLAQLEGLPSSRGEDLQTKCLLELYGLNLAELQRKVRTDVSSEYWLNVICAYPDRQLFDWGMMRLRRPLYGVGDPFAMDADDQIRKKRDAERLSRLEVQAKNHVETRKRRFFAEILNAVREFQLQIQASLKRRKQRNDGVQAWHGRQRQRATRAEKLRFQALKADDQEAYMQMVKESKNERLTILLEETNKLLVNLGAAVQRQKDLKQSDGIEPLEDSVAELSESVALKNEIFKESPLEEDVELIDSDHNGDTSDLLEGQRQYNSAIHSIQEKVTEQPSSLQGGELRPYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTISLIAYLLQHKGVTGPYLIVAPKAVLPNWISEFSTWAPSITTILYDGRLDERKAMKEELSGEGKFNVLITHYDLIIRDKAFLKKIHWKYLIVDEGHRLKNHECALARTLDSGYHIQRRLLLTGTPIQNSLQELWSLLNFLLPNIFNSVQNFEDWFNAPFADRVDVSLTDEEQLLIIRRLHQVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDNGSGKSKSLQNLTMQLRKCCNHPYLFVGDYDVYKREEIVRASGKFELLDRLLPKLRRAGHRVLLFSQMTRLMDILEIYLRLHDYKFLRLDGSTKTEERGSLLREFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEEIMRRGSSSLGTDVPSEREINRLAARSDEEFWLFEKMDEERRQKENYRSRLLEEHELPDWVYSPLNKDDKVKAFDSGSVTGKRKRKEVVYADTLSDLQWMKAMENGQDISKLSIKGKRRDHLPVDNHAQASDDMGAEERVLELRSESVPMANEGSSEDTFNVTPASKRLKPEEINSQKHENEDVRVSGLNEHVFSWNTHRKKRSSYLSQGSLSDTRGQNLN 1070
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1257g00134 1070 Gene3D - 342 596 IPR038718 -
Gabi1257g00134 1070 FunFam Chromatin structure-remodeling complex protein SYD 363 606 - -
Gabi1257g00134 1070 Gene3D - 603 901 IPR027417 -
Gabi1257g00134 1070 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 685 852 IPR001650 -
Gabi1257g00134 1070 SMART ultradead3 368 561 IPR014001 -
Gabi1257g00134 1070 MobiDBLite consensus disorder prediction 996 1070 - -
Gabi1257g00134 1070 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 384 550 IPR014001 -
Gabi1257g00134 1070 Pfam SNF2-related domain 375 663 IPR000330 GO:0005524|GO:0140658
Gabi1257g00134 1070 Pfam Snf2-ATP coupling, chromatin remodelling complex 889 949 IPR029295 GO:0042393
Gabi1257g00134 1070 MobiDBLite consensus disorder prediction 998 1012 - -
Gabi1257g00134 1070 SMART SnAC_2 888 949 IPR029295 GO:0042393
Gabi1257g00134 1070 SMART helicmild6 711 795 IPR001650 -
Gabi1257g00134 1070 CDD SF2_C_SNF 672 806 - -
Gabi1257g00134 1070 MobiDBLite consensus disorder prediction 1020 1036 - -
Gabi1257g00134 1070 FunFam Probable ATP-dependent DNA helicase CHR12 603 901 - -
Gabi1257g00134 1070 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 599 849 IPR027417 -
Gabi1257g00134 1070 PANTHER SNF2/RAD54 HELICASE FAMILY 164 991 - -
Gabi1257g00134 1070 MobiDBLite consensus disorder prediction 1049 1070 - -
Gabi1257g00134 1070 Coils Coil 886 906 - -
Gabi1257g00134 1070 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 347 597 IPR027417 -
Gabi1257g00134 1070 Pfam Helicase conserved C-terminal domain 682 795 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1257g00134 Gabi-Chr1257 1231216 1237895 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1257g00134 678 823 RAD5 or RAD16-like Gene Family AT5G43530 38.000 9.59e-22 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gabi1257g00134 SNF2_N 1.5e-68 CL0023