Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1257g00133 ATGGAGCAAACACTGATCGGTGCCCTCAACCTCGTTTCTCGCAACCTCCCTCTTCCTTCCGATCTCTTTGACGCCGTTTCTTCTATCTATCACGGATCTAACCACCTCAACTCCTTCGTACGCTACCTATTTCACCATTACTCTTTGCTTCATTTTCTCTCGTTAATTCTGTACCTTCAAGATGCACTGTTGAAGCAACGCCCTAATGGTGTCTCCAGTTCTACATTAAACAAAGCAATCGAAAGCCGTTTTCAAACTCAGATTCAGCATCGCTTAGCTCAACTTGAAGGATTGCCTTCAAGCAGGGGAGAAGACCTACAGACCAAGTGCCTGCTTGAGCTTTATGGACTAAATCTAGCAGAGTTGCAGAGGAAGGTTCGGACTGACGTAAGTTCTGAATACTGGCTCAATGTTATATGTGCATATCCTGACAGGCAACTGTTTGACTGGGGCATGATGCGGTTGCGTCGTCCACTTTATGGCGTTGGAGATCCATTTGCCATGGATGCTGATGATCAAATAAGGAAGAAACGGGATGCTGAGAGACTATCAAGATTAGAAGTGCAGGCAAAAAATCACGTAGAGACCAGAAAGAGAAGATTTTTTGCAGAAATACTGAATGCTGTCCGTGAGTTCCAATTACAAATTCAAGCTTCTTTGAAGAGGAGAAAACAGAGGAATGACGGTGTCCAGGCATGGCATGGAAGGCAAAGACAACGTGCAACGCGGGCTGAGAAATTGAGATTCCAAGCCTTAAAGGCTGATGATCAGGAAGCTTACATGCAAATGGTGAAAGAGAGTAAGAATGAAAGATTAACTATTCTTCTTGAAGAAACAAATAAACTACTTGTAAATTTGGGAGCAGCCGTTCAACGTCAAAAGGACTTAAAACAATCAGATGGTATTGAACCCTTGGAAGATTCAGTAGCTGAATTATCAGAATCAGTTGCTTTGAAGAATGAAATTTTTAAGGAATCACCTCTTGAGGAAGATGTGGAGTTGATAGATTCTGATCATAATGGTGACACTAGTGATTTACTTGAAGGTCAGCGGCAATACAATTCTGCCATACATTCAATTCAAGAAAAGGTAACGGAGCAGCCATCTAGTCTTCAAGGTGGGGAATTAAGACCATACCAGCTAGAAGGGCTCCAGTGGATGCTTTCTTTGTTTAATAACAACTTGAATGGAATTTTAGCCGATGAAATGGGGCTTGGGAAGACTATACAAACCATTTCGTTGATAGCGTATCTTTTGCAACACAAGGGTGTGACTGGTCCTTACTTGATTGTGGCGCCAAAGGCTGTTCTGCCAAATTGGATCAGTGAATTCTCAACATGGGCTCCTAGCATCACAACTATTCTTTATGATGGACGGCTGGATGAGAGGAAAGCAATGAAGGAAGAGTTGTCAGGGGAGGGGAAATTTAATGTTTTGATAACGCACTATGATCTTATAATACGAGACAAAGCATTTCTCAAGAAAATTCATTGGAAGTACTTGATTGTGGATGAAGGGCATCGTTTGAAGAATCATGAGTGTGCTCTAGCAAGAACCCTGGACTCTGGCTATCACATTCAACGAAGACTTCTGTTGACTGGTACCCCAATTCAGAACAGTTTGCAGGAATTGTGGTCCCTGCTCAATTTCCTCCTTCCAAACATTTTCAATTCAGTTCAGAATTTTGAGGACTGGTTTAATGCTCCCTTTGCAGACCGAGTTGATGTCTCTCTAACTGATGAAGAACAGTTATTGATCATTCGGCGTCTGCATCAAGTAATAAGGCCCTTCATATTAAGAAGGAAAAAGGATGAGGTGGAAAAATATCTTCCCGGGAAATCTCAGGTCATACTCAAATGTGATATGTCAGCCTGGCAGAAAGTATATTATCAACAAGTCACAGACGTGGGCAGAGTTGGCTTAGACAATGGTTCTGGAAAATCAAAAAGTCTACAGAACTTGACAATGCAACTCAGAAAGTGTTGTAACCATCCCTACCTCTTTGTTGGAGACTATGATGTGTATAAACGTGAGGAGATTGTCAGAGCATCAGGGAAGTTTGAACTTCTTGACCGTCTACTTCCAAAACTTCGCAGAGCTGGTCATAGAGTCCTCCTTTTTTCACAAATGACTCGTCTCATGGACATTCTTGAAATTTATTTGCGACTTCATGATTATAAATTTCTTAGGCTTGATGGCTCAACAAAAACTGAGGAAAGAGGTTCCCTACTACGGGAATTCAATGCTCCTGACTCTCCATACTTTATGTTTCTCTTGAGCACCCGCGCTGGAGGTCTTGGTTTGAACTTGCAAACAGCAGATACTGTTATAATTTTTGACAGCGATTGGAACCCACAAATGGATCAACAAGCGGAGGATCGAGCCCATCGCATTGGGCAAAAAAAGGAAGTTAGAGTTTTTGTGTTAGTTAGTGTGGGATCTATTGAAGAGGTGATTTTAGAGCGCGCTAAACAAAAGATGGGCATTGATGCCAAAGTCATCCAGGCAGGGCTTTTCAACACAACTTCAACAGCCCAGGACAGAAGAGAAATGTTGGAGGAGATTATGCGTAGAGGTTCAAGCTCACTTGGGACAGATGTGCCAAGTGAGAGAGAAATTAACCGCCTTGCAGCCCGATCTGATGAGGAATTTTGGCTATTCGAGAAAATGGATGAAGAGAGAAGGCAAAAGGAGAATTACAGATCTCGACTCTTGGAAGAGCATGAACTGCCAGATTGGGTATACTCTCCACTAAATAAGGATGATAAGGTCAAAGCTTTTGACAGCGGTAGTGTTACTGGAAAGCGGAAAAGAAAAGAAGTGGTATATGCAGATACATTAAGTGATCTACAATGGATGAAGGCTATGGAGAACGGACAAGACATATCTAAGCTTTCAATTAAAGGGAAAAGAAGAGACCACCTCCCTGTAGACAATCATGCACAAGCCAGTGATGACATGGGGGCAGAAGAAAGGGTATTAGAGTTAAGGAGTGAAAGTGTCCCCATGGCCAATGAGGGATCAAGTGAAGATACTTTCAATGTGACCCCTGCCTCTAAGAGACTCAAGCCTGAAGAAATAAATTCCCAGAAACACGAAAACGAGGATGTCAGAGTAAGTGGTTTGAACGAGCATGTGTTTTCCTGGAATACTCACAGAAAGAAGAGATCGAGCTATCTTAGCCAGGGTTCATTATCTGATACTAGAGGGCAGAACTTGAACTGA 3225 0.4239 MEQTLIGALNLVSRNLPLPSDLFDAVSSIYHGSNHLNSFVRYLFHHYSLLHFLSLILYLQDALLKQRPNGVSSSTLNKAIESRFQTQIQHRLAQLEGLPSSRGEDLQTKCLLELYGLNLAELQRKVRTDVSSEYWLNVICAYPDRQLFDWGMMRLRRPLYGVGDPFAMDADDQIRKKRDAERLSRLEVQAKNHVETRKRRFFAEILNAVREFQLQIQASLKRRKQRNDGVQAWHGRQRQRATRAEKLRFQALKADDQEAYMQMVKESKNERLTILLEETNKLLVNLGAAVQRQKDLKQSDGIEPLEDSVAELSESVALKNEIFKESPLEEDVELIDSDHNGDTSDLLEGQRQYNSAIHSIQEKVTEQPSSLQGGELRPYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTISLIAYLLQHKGVTGPYLIVAPKAVLPNWISEFSTWAPSITTILYDGRLDERKAMKEELSGEGKFNVLITHYDLIIRDKAFLKKIHWKYLIVDEGHRLKNHECALARTLDSGYHIQRRLLLTGTPIQNSLQELWSLLNFLLPNIFNSVQNFEDWFNAPFADRVDVSLTDEEQLLIIRRLHQVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDNGSGKSKSLQNLTMQLRKCCNHPYLFVGDYDVYKREEIVRASGKFELLDRLLPKLRRAGHRVLLFSQMTRLMDILEIYLRLHDYKFLRLDGSTKTEERGSLLREFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEEIMRRGSSSLGTDVPSEREINRLAARSDEEFWLFEKMDEERRQKENYRSRLLEEHELPDWVYSPLNKDDKVKAFDSGSVTGKRKRKEVVYADTLSDLQWMKAMENGQDISKLSIKGKRRDHLPVDNHAQASDDMGAEERVLELRSESVPMANEGSSEDTFNVTPASKRLKPEEINSQKHENEDVRVSGLNEHVFSWNTHRKKRSSYLSQGSLSDTRGQNLN 1074
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1257g00133 1074 Pfam Snf2-ATP coupling, chromatin remodelling complex 893 953 IPR029295 GO:0042393
Gabi1257g00133 1074 MobiDBLite consensus disorder prediction 1000 1074 - -
Gabi1257g00133 1074 Gene3D - 346 600 IPR038718 -
Gabi1257g00133 1074 MobiDBLite consensus disorder prediction 1002 1016 - -
Gabi1257g00133 1074 PANTHER SNF2/RAD54 HELICASE FAMILY 168 995 - -
Gabi1257g00133 1074 Pfam SNF2-related domain 379 667 IPR000330 GO:0005524|GO:0140658
Gabi1257g00133 1074 Gene3D - 607 905 IPR027417 -
Gabi1257g00133 1074 MobiDBLite consensus disorder prediction 1024 1040 - -
Gabi1257g00133 1074 SMART helicmild6 715 799 IPR001650 -
Gabi1257g00133 1074 CDD SF2_C_SNF 676 810 - -
Gabi1257g00133 1074 FunFam Probable ATP-dependent DNA helicase CHR12 607 905 - -
Gabi1257g00133 1074 Pfam Helicase conserved C-terminal domain 686 799 IPR001650 -
Gabi1257g00133 1074 SMART ultradead3 372 565 IPR014001 -
Gabi1257g00133 1074 MobiDBLite consensus disorder prediction 1053 1074 - -
Gabi1257g00133 1074 FunFam Chromatin structure-remodeling complex protein SYD 367 610 - -
Gabi1257g00133 1074 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 689 856 IPR001650 -
Gabi1257g00133 1074 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 351 601 IPR027417 -
Gabi1257g00133 1074 Coils Coil 890 910 - -
Gabi1257g00133 1074 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 388 554 IPR014001 -
Gabi1257g00133 1074 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 603 853 IPR027417 -
Gabi1257g00133 1074 SMART SnAC_2 892 953 IPR029295 GO:0042393
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1257g00133 Gabi-Chr1257 1231216 1237895 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1257g00133 682 827 RAD5 or RAD16-like Gene Family AT5G43530 38.000 9.90e-22 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gabi1257g00133 SNF2_N 1.5e-68 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1257g00133 - - gmx:100775993 1877.83