Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1257g00126 ATGACCAATGAGATCGGGCAGAAGCCTCCCCCTTCGATTCTCGTGGCTCGATTCAAGGCTTTGCTTAAGCAACGCGAGGATGAACTGGGGCTGAGGGCTTCAGGTGAAGCGTCGCCACCCACCACTGAAGAAATTGTTCGGATTTACGAGGAGTTGTTGTCGGAACTCACCTCCAATGTGAAGCCCATTATCACCGATCTTACCATCGTCGCGGAGCAGCAGAGGGACCATGCCAAAGGCATTGCTGATGCTATTTGCGCTCGGATTCTTGAGGTGCCTGCAGATCAAAAGCTTCCTTCACTCTATCTGTTGGACAGTATTGTGAAGAATTTTGGCCAGGAATATATCAGATACTTCTCTTTACATCTACCGGAAGTTTTCTGCGTGGCATACAGACAGGTTCGGCCTAATTCGCATTCTGCTATGCGACATCTCTTTGGTACGTGGTCAAAAGTCTTCCATCCCTCTGTCCTACGGAAGATTGAAGCTCAATTGCAATTTTCTCAAGCAATTAATAATCAACAATCCAGTGTTAATCCCCTCAGGACTTCTGAATCTGCTCGACCAAGTAACGGGATACATGTTAATCCAAAATACTTACGACAGATGGAACACTCTAGTTCAATTATGGATAGTGTTGGAGGTGAAAGGTTGGACTTAACAGGAACTGTAGGTAATACAAATTTTGGCCCTGTAGCTAGTAAGAACCATCAATTTGTGCCTAGTAGGTCTGGAAGATCCTCTTCACCTTCAAGAACTGGACTAAATAGGGCTTCATCTGCATGTATGGATGAATATGCAGCTGACAATTCTGTTGGCAGGACAGTTGAGAGTGAGTCTCCTCATCCTGCAGTTGATTATGGAGTAGCTAAAGCATTAGGGAGAGAAGAAGAGTTGATTGAGTGGCATCAAAAGCAGTTTTCTGGTGATGGTCGGAACAGATTTCAAACTTCCATGACATACAGTCTTAGTAATGGACAACAGCGTCAAAGTCCACGAGCTCTAATTGATGCATATGGCAGTGACAAAAGCCAAGAAACTTCCAGCAGTAAGCCTTTGTTAGTTGAATTGCTGGATAGAAATGGTATAGACAAGGTTTCGACAACATCATGGCAGAATACGGAAGAGGAGGAATTTGATTGGGAAGATATGAGTCCAACATTAGTAGACCATAATAGAAATAATGGTTTCCTGAAACCAACTATTGGTTTCTCCGCGGAAAGGCCTGTTATTGTTGCAGCTAATGCAACCTCTTCAGATCAAGATACCAGGAAGGGCTGGTCTAGTGGGTCTCAGTTTCCTCCAGTGGATGATTCCTCTGTTACAGCAGAAGATGCATTTGCCTCTTCAGCTTATGGTCGTGTATCACGGGGTCAGGTGTCTGGATTCCAGAATCAAATAAATGAGAGTCCGGGGTCAGGTCAACATCTAGATGCTTGGAAGATTTCTAATCATCTGTCTAATTCTTCACAACACCTCTTTAATATTAGGGGACGAGATAGGAATCTTCTGATGCCTCCTATTCATAAAATTCCAAATACTGATGTAAACCCATATGGGACTCGACTGGCTGTGTCAAGGATTGTTCCTGGTCTCAAGTCTAACATGGAGGGTCATCTGCCAGTTTTGCCACCATCTTTTGAAATGAGGCCTTCTGTAAATGTGTATACTGCACGTCCGTCCAACTTAAATCCTATATTTCCATTGCAAAATCATGCTCGGACTCAATTCGAATCAATAAATGGTAATAATTCCATTGTGAGTCATGGTCCAAATAAATCTTTGCCTATGCGCGAACAGTTGTTGGACAGTGTTGATAACAAAGATATCAGTAAAGGAAACCGACATCCACTGCCTAATCATCTAGCTGGCCCGATAACATCTTCCCACCGAAATCGTGGACAAGTACCACAAGTACAGTTTCTTCCATCTCAGGATCCAGCAGCATCACAATTTAGTCGTGGGAGCTCTTTGCAAGGACAGAGTGCTTCTATGAGTACACTACCGCTACCTGTTATGCAATTCCCTCCGAGCCAAAGTATTGCAAATAACTCGTTACGTTTACAGGGGGGAGCCTTGCCACCTTTACCTAATTCTCACCTTCCTGCTCCATCACAAATGGTACCTCATCATAATGCTAGTCCTTCGGTGTCAAGTCAACAGCCAACTCTTGCATATTCTAATTTGATTAATTCACTCATGGCCCAAGGTATAATCTCATTGACTAATCAGCCACCTGGACAGGATTCTGTTGGAATTGAGTTTAATCCAGATATTCTGAAGGTTCGTCATGAATCTGCAGTCAGTGCGTTATATGGTGATCTACCCAGACAATGCACAACGTGTGGTCTCCGATTTAAATGCCAAGATGAGCACAGTAGTCACATGGATTGGCATGTGACTAAGAACCGAATGTCTAAAAACCGTAAGCAGAAGCTCTCTCGTAAGTGGTTTGTGAGTGAGAGGATGTGGCTTAGCGGTGCAGAGGCATTGGGAACAGAGTCGATTCCTGGTTTTTTGCCAACTGAGACCATTGAGGTAAAGAAGGAAGATGAAGAGTTGGCTGTTCCTGCTGAAGAGGACCAGAATACATGTGCATTATGTGGAGAGCCTTTCGATGAGTTTTACAGTGATGAAACGGAGGAGTGGATGTATAGAGGAGCTGTATATCTTAATGCACCCGAGGGAACAACGGCAGGCATGGACAGGTCACAGTTAGGCCCCATTATTCATGCTAAATGCAGGTCTGAATCTAGTATAATCCCAGCTGAAGATTTTGGGCTCAATGAAGGGGGCACCTATGGAGAAGGCAGTCAAAGAAAACGAATGCGGGTTGACTAG 2841 0.4421 MTNEIGQKPPPSILVARFKALLKQREDELGLRASGEASPPTTEEIVRIYEELLSELTSNVKPIITDLTIVAEQQRDHAKGIADAICARILEVPADQKLPSLYLLDSIVKNFGQEYIRYFSLHLPEVFCVAYRQVRPNSHSAMRHLFGTWSKVFHPSVLRKIEAQLQFSQAINNQQSSVNPLRTSESARPSNGIHVNPKYLRQMEHSSSIMDSVGGERLDLTGTVGNTNFGPVASKNHQFVPSRSGRSSSPSRTGLNRASSACMDEYAADNSVGRTVESESPHPAVDYGVAKALGREEELIEWHQKQFSGDGRNRFQTSMTYSLSNGQQRQSPRALIDAYGSDKSQETSSSKPLLVELLDRNGIDKVSTTSWQNTEEEEFDWEDMSPTLVDHNRNNGFLKPTIGFSAERPVIVAANATSSDQDTRKGWSSGSQFPPVDDSSVTAEDAFASSAYGRVSRGQVSGFQNQINESPGSGQHLDAWKISNHLSNSSQHLFNIRGRDRNLLMPPIHKIPNTDVNPYGTRLAVSRIVPGLKSNMEGHLPVLPPSFEMRPSVNVYTARPSNLNPIFPLQNHARTQFESINGNNSIVSHGPNKSLPMREQLLDSVDNKDISKGNRHPLPNHLAGPITSSHRNRGQVPQVQFLPSQDPAASQFSRGSSLQGQSASMSTLPLPVMQFPPSQSIANNSLRLQGGALPPLPNSHLPAPSQMVPHHNASPSVSSQQPTLAYSNLINSLMAQGIISLTNQPPGQDSVGIEFNPDILKVRHESAVSALYGDLPRQCTTCGLRFKCQDEHSSHMDWHVTKNRMSKNRKQKLSRKWFVSERMWLSGAEALGTESIPGFLPTETIEVKKEDEELAVPAEEDQNTCALCGEPFDEFYSDETEEWMYRGAVYLNAPEGTTAGMDRSQLGPIIHAKCRSESSIIPAEDFGLNEGGTYGEGSQRKRMRVD 946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1257g00126 946 FunFam polyadenylation and cleavage factor homolog 4 38 166 - -
Gabi1257g00126 946 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 40 929 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Gabi1257g00126 946 ProSitePatterns Zinc finger C2H2 type domain signature. 779 799 IPR013087 -
Gabi1257g00126 946 MobiDBLite consensus disorder prediction 174 191 - -
Gabi1257g00126 946 ProSiteProfiles CID domain profile. 41 169 IPR006569 -
Gabi1257g00126 946 MobiDBLite consensus disorder prediction 420 439 - -
Gabi1257g00126 946 MobiDBLite consensus disorder prediction 221 257 - -
Gabi1257g00126 946 MobiDBLite consensus disorder prediction 174 194 - -
Gabi1257g00126 946 Pfam CID domain 51 160 IPR006569 -
Gabi1257g00126 946 MobiDBLite consensus disorder prediction 644 664 - -
Gabi1257g00126 946 SUPERFAMILY ENTH/VHS domain 41 166 IPR008942 -
Gabi1257g00126 946 MobiDBLite consensus disorder prediction 608 631 - -
Gabi1257g00126 946 CDD CID_Pcf11 49 166 IPR047415 -
Gabi1257g00126 946 MobiDBLite consensus disorder prediction 927 946 - -
Gabi1257g00126 946 SMART 558neu5 44 166 IPR006569 -
Gabi1257g00126 946 Gene3D - 36 167 IPR008942 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1257g00126 Gabi-Chr1257 1112548 1119045 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1257g00126 675 944 C2H2 Transcription Factor Family AT4G04885 64.207 1.43e-109 355